Repbase Reports

2002, Volume 2, Issue 4
April 30, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 20

LOOPERN2_DR

LOOPERN2_DR is a nonautonomous DNA transposon - a consensus.

Submitted:
30-Apr-2002
Accepted:
30-Apr-2002
Key Words:
Nonautonomous DNA transposon; LOOPERN2_DR
Source:
consensus
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
LOOPERN2_DR, a nonautonomous DNA transposon from zebrafish.
Journal:
Repbase Reports 2:(4) p. 20 (2002)
Abstract:
The consensus sequence was reconstructed based on 20 copies present in sequenced DNA that represents ~1% of the genome. Approximately 2000 copies of LOOPERN2_DR are expected to populate the complete zebrafish genome. LOOPERN2_DR copies are ~6% divergent from the consensus sequence. This element is characterized by 14-bp terminal inverted repeats and putative TTAA targets site duplications (or, less likely, TTTAAA). Its classification is not very certain yet, although it is expected to be a member of the piggyBac/Looper superfamily.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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