Repbase Reports

2002, Volume 2, Issue 4
April 30, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 13

HARBINGERN2_DR

HARBINGERN2_DR is a nonautonomous DNA transposon - a consensus.

Submitted:
30-Apr-2002
Accepted:
30-Apr-2002
Key Words:
Nonautonomous DNA transposon; HARBINGER superfamily; 3-bp TSD; 16-bp TIRs; HARBINGERN2_DR
Source:
consensus
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[1] Authors:
Kapitonov,V.V
Title:
HARBINGERN2_DR, a nonautonomous DNA transposon from Danio rerio.
Journal:
Repbase Reports 2:(4) p. 13 (2002)
Abstract:
HARBINGERN2_DR copies are flanked by 3-bp target site duplications (usually TAA) generated upon their integration in the genome. It has perfect 16-bp terminal inverted repeats similar to other HARBINGERs. There are approximately 1000 copies of HARBINGERN2_DR harbored by the zebrafish genome. The consensus sequence was reconstructed based on 11 copies which are ~5% divergent from the consensus sequence.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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