Repbase Reports

2002, Volume 2, Issue 2
February 28, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 5

ATLANTYS3I

ATLANTYS3I is an internal portion of the ATLANTYS3 endogenous retrovirus - a molecular fossil.

Submitted:
28-Feb-2002
Accepted:
28-Feb-2002
Key Words:
Gypsy-like endogenous retrovirus; ATLANTYS superfamily; gag; RT; RNase H; integrase; ATLANTYS3LTR; ATLANTYS3I
Source:
Arabidopsis thaliana
Organism:
Arabidopsis thaliana
Taxonomy:
Eukaryotae; mitochondrial eukaryotes; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; Magnoliopsida; Capparales; Brassicaceae; Arabidopsis
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Molecular fossil of the ATLANTYS3 family of endogenous retroviruses.
Journal:
Repbase Reports 2:(2) p. 5 (2002)
Abstract:
ATLANTYS3I is an internal portion of the ATLANTYS3 endogenous retrovirus. There are several copies of ATLANTYS3I in the genome; they are over 90% identical to each other. Long terminal repeats are deposited in Repbase Update as ATLANTYS3LTR ATLANTYS3I is flanked by 98% identical LTRs and has 5-bp TSD. Like other members of the ATLANTYS superfamily, ATLANTYS3I encodes s hypotetical protein in reverse orientation, instead of env.
Derived:
Positions 31838 21169 Accession No AC006586 GenBank (rel. 128.0)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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