Repbase Reports |
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| 2002, Volume 2, Issue 11 |
| November 30, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 22 |
P3_AG |
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P3_AG, a P-like DNA transposon - a consensus sequence. |
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Submitted: 00- - 0 |
Accepted: 30-Nov-2002 |
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Key Words: DNA transposon; P superfamily; P3_AG |
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Source: Anopheles gambiae str. PEST |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: P3_AG, a young family of P-like DNA transposons from African malaria mosquito. |
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Journal: Repbase Reports 2:(11) p.22 (2002) |
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Abstract: The A. gambiae genome harbors many divergent families of P-like DNA transposons. One of the youngest families is P3_AG. Some P3_AG copies are identical to each other. It's possible, that P3_AG is an active DNA transposon. P3_AG elements are flanked by 8-bp target site duplications. Terminal inverted repeats are 29 bp long. The P3_AG encodes a 879-aa P-like DNA transposase, called P3_AGp. Predicted exon/intron structure (based on FGENESH and GENSCAN): 356-614, 679-2198, 2260-3120). The P3_AGp transposase is 43% identical to the P1_AGp transposase encoded by P1_AG. P3_AGp: MPRSCAAAFCKNNAENVKKRGLNITFHSFPSDDSLPKWIDFCKRDEHWKPTKISTVCSLH FKPDDYQMAKSSLPQTLPVLKRLKPYAIPSLIQPADFIQNEPSNMTAPLKECNQPNVEFQ TDSEYFSDVENVPSQTIIDMKRELDQVKEDNRKLIEVNTNLRDKLHSYFNENKRLKAEID NLQKHISKKDAGIDEAALVTAMKERLKPTLSENQIDIILKKKKRVVWTKEEIGSALTLKY FGLRCYKYLAKDRKFPLPADATLKRYTKNLVVKEGILDDVLKLISNLTSTFTEKDRLCAL SFDEMKVNRIIELDKASDEIIGPHNYLQVVMARGLCNKWKQPVYIGFDKKMTKEILLKII EKLSEININVVAIISDNCSTNVSCWKELGAKDYERPYFQHPTTLNNVYVIPDAPHLLKLL RNWFLDSGFTYNGKHIKADLLFDMIASRNETEITPLYKLSKTHLVMTPQERQNVRRAAQL LSHTTAISLRRYFKNNAEATDLANFIEKVDLWFSISNSYSPFAKLDYKKSYTASDDQIKA LDEMFEIVSNMTVIGKHSLQIFQKSLLMQITSLKLLYDDLHKRHNISFISTHKLNQDVLE NFFSQLRQIGGVYDHPSPMSCIHRIKMIILGKAPTFLKNQTDLEPSTFSCTDEYISSQIR TSIEIENEGSEQANDGDIISASIITSALNQPPVKQSIQSDTLSSRSSEMLSSVSSSAIEL PEQDSDGLEYIMGYIGRQCFEKFPHLNLGNLSLNLNSDHSYSHPPSFVKHLSVAGLFVPS EAFLKQGYKMEKIFQKLHPNGNFNKKRYISKRLVKRLQKEFPELPLIVVQQFAKHRINIR IKFLNMKIANEKRVNNKRKAPSHSKTAKKCEKLQISCFV.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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