Repbase Reports |
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| 2002, Volume 2, Issue 11 |
| November 30, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 20 |
P1_AG |
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P1_AG, a P-like DNA transposon - a consensus sequence. |
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Submitted: 00- - 0 |
Accepted: 30-Nov-2002 |
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Key Words: DNA transposon; P superfamily; P1_AG |
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Source: Anopheles gambiae str. PEST |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: P1_AG: a family of P-like DNA transposons from African malaria mosquito. |
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Journal: Repbase Reports 2:(11) p.20 (2002) |
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Abstract: The A. gambiae genome harbors many divergent families of P-like DNA transposons. One of those families is P1_AG. P1_AG elements are flanked by 8-bp target site duplications. Terminal inverted repeats are 11bp long. The P1_AG consensus sequence was reconstructed from several copies that are only ~1% divergent from each other. Presumably, P1_AG copies have multiplied in the genome during last 1 million years. The P1_AG encodes a 895-aa P-like DNA transposase called P1_AGp. Putative exon/intron structure (based on FGENESH): 302-563, 624-734, 797-2262, 2433-3281. P1_AGp: MSSNYKCCVAFCKNNRYNVKKVGVNVCFHKFPEGKETKQKWIAFCQREISWIPSSSNVVC SQHFLPSDYQLSSSHNTKRGANWLNPEAVPSILLPQDTGLNLSQFNEHQQNNNNDESSRA ELQGATSSHLLPDENDLILIGKENVCKKCKGLQQKIFNLEAKLNELEERNKQLVTINNKL SDTLKEVNEKEKEHLKKLEELDKATKKIKEEWPRANFVQNMKDSLKGSLSSNQIDLILGI KKTVRWTKEELSLAFTLRYFSQRAYRYIGDDMKIPVPVPRTLQRYSSKIDLKQGILEDIL KFIGSYSQTLKPMDRECVLSFDEMKVSRVLEYDPSADEIVGPFNYLQVVMMRGLFKQWKQ PIFIGFDTKMTKDIIIEIISRLSEKDINVVAIISDNCQTNIGCWKELGARDDVEKPYFPH PKTNKNVYVIPDTPHLLKLLRNWLLDHGFEYNGQLIETTNLLRMVAKRMESEMTPLFKLT TSHIDMTPQERQNVRRAAELLSRTTAVALRTYFPDDDNAKILANFIEKVDVWFSISNSYT PFAKLDFKKAYTASDDQVRALTDMYDIISNMTIPGKNGLQIFQRSIMMQIKSLQMVFADM KLKHDAKFICTHKLNQDVLENFFSQLRQIGGVYDHPSPLSCIYRIRLMILGKTPTILHNQ TTTVEAANCEQDEFITTTESNVAGARSNDVFISASMFEKAEITPELPDVKAMEEANNFVS QDVSSLSSVSDTSIELPHQEADGLSYILGYLAKKHHSQFSHLNLGEHTFKTRIDHNYCQP PTFVHHLSCGGLIEPSDEFLNLGKKMEKIFLKMNPDGGLLKGERIVDRITNKIKRHLTEL PVEIIRSFAKQRVIVRMRYLNLKATAEQLNKMKHKKRKFVTENTKAAKKMKKIIN.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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