Repbase Reports |
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| 2002, Volume 2, Issue 10 |
| October 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 7 |
G5A_DM |
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G5A_DM is a non-LTR retrotransposon - a partial consensus sequence. |
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Submitted: 31-Oct-2002 |
Accepted: 31-Oct-2002 |
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Key Words: Non-LTR retrotransposon; ORF2; DNA binding protein; AP endonuclease; reverse transcriptase; JOCKEY clade; G5A_DM |
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Source: consensus |
Organism: Drosophila melanogaster |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta; Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: G5A_DM, a subfamily of non-LTR retrotransposons from the Jockey clade. |
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Journal: Repbase Reports 2:(10) p. 7 (2002) |
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Abstract: G5A_DM belongs to the JOCKEY clad of non-LTR retrotransposons. G5A_DM forms a separate subfamily of retrotransposons that were recently (several million years ago) active in the Drosophila melanogaster genome. There are about 50 copies of G5A_DM in the genome, they are ~7% divergent from the consensus sequence. The G5A_DM and G5_DM consensus sequences are 80% identical with each other. The G5A_DM consensus is not complete, approximately a 2000-bp 3' portion of the element is not present here. The ORF2 is reconstructed completely. It encodes the 904-aa G5A_DM-orf2p endonuclease and reverse transcriptase (positions 16-2727). G5A_DM-orf2p: MGPLRIPTWNSIGASLKTNEFLALIELHDIDILLLSEVHFSSRSNFRVNGFTLHTANHPDDSQHGGAAIL VGSNISHQPFATLSQNHIQAVVIQLTASRGNFNVASVYCPPTLRWTDAIVGQFITQFGTKFLAAGDWNAK HRWWGNYRMRTRGRVLYSALAEEGIDIVATGEATCYPYRATASPSAIDFGISKGFRQQQIKVQLLSSDHL PLLFELDEDAQSFRSVTKMLSPQANIRIFKEHIEATVELNIPIDTCSRLEAYVDYFTPAIIEAARQATPT PHQARLTAIRRPPILSIEARDLLSHKRRLRRRYIATGDPSIYQQYSSTTNRLRRLLANNRKANLDTLLEG AGPDSNSGFSIWKLTRGIKRQPLFQSPIQDRGGLWLKTDDEKASAFASHLSSTFMPFNLTDDTNREAIAN FLDTPTAPTRPIRHTSPQEVMMQLKALQPKKNPGYDGIDNRTAKFLPRKGVLALVKIFNVMLRLGHFPRQ WKRARIVMIPKPGKSPTQIDSYRPISLLPTFSKVFERILLTRLMELPQVTEHIPQHQFGFRKSHGCPEQI HRLVKHITHGFEHKLYTVGVFLDVKQAFDKVWHEGLLYKMKDLLPAAHYAILSSFIADRTFDVAVRDSRS SMEHIHAGVPQGSVLGPFLYTLYTADMPTPVNNTDEASPAQLILATYADDTAMLASHSSLQFASNAVQEW LHAIERWTAKWNIAINCTKSACVTFTLRPQTCLGLLFDGNTIDYVSSHCYLGVHLDRTLSWKAHITAVRA KSSWKLKKLDWLFHSSKLHMATKALLIKAILGPTLTYAIQVWGTASKTQLNRLRVIQSRAARHASGLPWY VSNRVIERDLKVVPLGDQINFHSSRYADRLSAHPNTLANDLVDPISLRRLKRIHPHELLTRKIV
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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