Repbase Reports |
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| 2002, Volume 2, Issue 10 |
| October 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 3 |
DOC4_DM |
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DOC4_DM is a non-LTR retrotransposon - a partial consensus. |
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Submitted: 31-Oct-2002 |
Accepted: 31-Oct-2002 |
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Key Words: Non-LTR retrotransposon; ORF1; ORF2; JOCKEY clade; reverse transcriptase; DOC4_DM |
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Source: consensus |
Organism: Drosophila melanogaster |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta; Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: DOC4_DM, a family of Jockey-like non-LTR retrotransposons from D. melanogaster. |
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Journal: Repbase Reports 2:(10) p. 3 (2002) |
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Abstract: DOC4_DM belongs to the JOCKEY clade of non-LTR retrotransposons. DOC4_DM is a separate family. Members of this family are ~94% identical to the DOC4_DM consensus sequence. Therefore, this family was active a few million years ago. DOC4_DM is <70% identical to reported retrotransposons. The sequence is incomplete. There are ~20 copies of DOC4_DM present in the sequenced portion the D. melanogaster genome. The amount of sequence data is not sufficient for a complete reconstruction of the ORF2 protein encoded by DOC4_DM. The ~400-aa internal portion of ORF2p is not reconstructed. ORF1p (positions 1-1743): QNEIREQRQREQDERRLSSIKNNAYFSFVSTETLKPSQDQRAHSCSPSLPSTVPKSWSEECASPMPQPTT NYTQTPLTIVAKPPLLSLAAVTTSTVASLTTAIASTTTLTATVSSTQTIQSTTSRAFALQAKQLTATITD LRESKSNPSGRPNSVMQTGMDRYVFVKRKRSPQRTTGNRAKINCGSETKTTTTNNKNMFALLAENASEEA NKTTDSVSQKPKPPPIYIQEITTNALANKIVQLIANNNFHVIPLRRGKIQETKLQVKTEDQFHAVSKFLN ENGKKYYTYQLKSSKGLQVVLKGIEPDVTPNEVANALHEKGFNVKSVINILNKDKKPQPLFKVELDPTSQ TLKRNEVHPIYNLQFLLHRKITVEEPHKRNGPVQCSNCQEYGHTKTYCTLPSVCVACGDLHESGTCPANK LDPNSKKCGNCGENHTANYRGCPVYKDLKSRMNKRIASARSTNNTQKIWYPKNVWYPPNRFLTFSSPTPN CHPLPPVSTIPGVSFASALKSGTEGPASTTEFSKAPQPRAVPDDLQQPTSAIEKIMLSFQATMTEFMSFM RTTMQDLTCALVQVLASQHSK
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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