Repbase Reports

2002, Volume 2, Issue 1
January 31, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 45

SENKUSHA1

DNA transposon; Harbinger/PIF-IS5 class; SENKUSHA1.

Submitted:
31-Jan-2002
Accepted:
31-Jan-2002
Key Words:
DNA transposon; Harbinger/PIF-IS5 class; SENKUSHA1
Source:
consensus
Organism:
Fugu rubripes
Taxonomy:
Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus; Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Acanthopterygii; Percomorpha; Tetraodontiformes; Tetraodontoidei; Tetraodontidae; Fugu
[1] Authors:
Smit,A.F.A.
Title:
Initial survey of interspersed repeats in Takifugu rubripes.
Journal:
Repbase Reports 2:(1) p. 45 (2002)
Abstract:
SENKUSHA1 is the first Harbinger type DNA transposon reported in vertebrates. SENKUSHA means harbinger/forerunner in Japanese. This consensus may still contain internal deletions. The ORF at pos 796-1716 encodes a protein (fragment) that has 48% similarity to the Harbinger, and somewhat lower similarity to the CANDYSTRIPE and TURMOIL transposases. Copies are about 5% diverged from the consensus. The Fugu genome contains multiple closely related elements (e.g. SENKUSHA2)
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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