Repbase Reports |
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| 2002, Volume 2, Issue 1 |
| January 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 45 |
SENKUSHA1 |
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DNA transposon; Harbinger/PIF-IS5 class; SENKUSHA1. |
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Submitted: 31-Jan-2002 |
Accepted: 31-Jan-2002 |
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Key Words: DNA transposon; Harbinger/PIF-IS5 class; SENKUSHA1 |
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Source: consensus |
Organism: Fugu rubripes |
Taxonomy: Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus; Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Acanthopterygii; Percomorpha; Tetraodontiformes; Tetraodontoidei; Tetraodontidae; Fugu |
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| [1] |
Authors: Smit,A.F.A. |
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Title: Initial survey of interspersed repeats in Takifugu rubripes. |
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Journal: Repbase Reports 2:(1) p. 45 (2002) |
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Abstract: SENKUSHA1 is the first Harbinger type DNA transposon reported in vertebrates. SENKUSHA means harbinger/forerunner in Japanese. This consensus may still contain internal deletions. The ORF at pos 796-1716 encodes a protein (fragment) that has 48% similarity to the Harbinger, and somewhat lower similarity to the CANDYSTRIPE and TURMOIL transposases. Copies are about 5% diverged from the consensus. The Fugu genome contains multiple closely related elements (e.g. SENKUSHA2)
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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