Repbase Reports

2002, Volume 2, Issue 1
January 31, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 29

KOPI1_I

LTR retrotransposon; long terminal repeat; Copia superfamily; KOPI1_I.

Submitted:
31-Jan-2002
Accepted:
31-Jan-2002
Key Words:
LTR retrotransposon; long terminal repeat; Copia superfamily; KOPI1_I
Source:
consensus
Organism:
Fugu rubripes
Taxonomy:
Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus; Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Acanthopterygii; Percomorpha; Tetraodontiformes; Tetraodontoidei; Tetraodontidae; Fugu
[1] Authors:
Smit,A.F.A.
Title:
Initial survey of interspersed repeats in Takifugu rubripes.
Journal:
Repbase Reports 2:(1) p. 29 (2002)
Abstract:
The product of ORF 121-1923 is 62% similar to the C-terminal part of the pol gene of TNT and RIR1 in Rice, and to other representatives of the Copia class of LTR elements. The consensus is 5' truncated.. Perhaps a dozen copies in Fugu, mostly as solo-LTRs (KOPI1_LTR). On average, copies are 1.2 % diverged from the consensus
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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