Repbase Reports

2002, Volume 2, Issue 1
January 31, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 5

CHAPLIN1_FR

DNA transposon; hAT class; MER1 group; CHAPLIN1_FR.

Submitted:
31-Jan-2002
Accepted:
31-Jan-2002
Key Words:
DNA transposon; hAT class; MER1 group; CHAPLIN1_FR
Source:
consensus
Organism:
Fugu rubripes
Taxonomy:
Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus; Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Acanthopterygii; Percomorpha; Tetraodontiformes; Tetraodontoidei; Tetraodontidae; Fugu
[1] Authors:
Smit,A.F.A.
Title:
Initial survey of interspersed repeats in Takifugu rubripes.
Journal:
Repbase Reports 2:(1) p. 5 (2002)
Abstract:
The CHAPLIN transposons are hobo-Activator-Tam3 like elements belonging to the distinct MER1/Charlie branch. This clade is characterized by the preferred 8 bp duplicated target site NTCTAGAN. The current CHAPLIN1_FR is not a full-length, autonomous element. The ORF from bp 300-720 region encodes a fragment of a protein most similar to the CHAPLIN8 and mammalian CHARLIE8 transposases. On average, copies are 6% diverged from the consensus.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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