Repbase Reports

2002, Volume 2, Issue 1
January 31, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 2

ATCOPIA96_I

Internal portion of the ATCOPIA96 copia-like LTR-retrotransposon - a fossil.

Submitted:
31-Jan-2002
Accepted:
31-Jan-2002
Key Words:
LTR-retrotransposon; COPIA superfamily; ATCOPIA96 family; internal portion; pol; reverse transcriptase; ATCOPIA96LTR; ATCOPIA96_I
Source:
Arabidopsis thaliana
Organism:
Arabidopsis thaliana
Taxonomy:
Eukaryota; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
The ATCOPIA96 family of copia-like LTR-retrotransposons.
Journal:
Repbase Reports 2:(1) p. 2 (2002)
Abstract:
ATCOPIA96_I is an internal portion of the ATCOPIA96 copia-like LTR retrotransposon flanked by 5% divergent LTRs, ATCOPIA96LTR, and 5 bp-long TSDs (AAATA). ATCOPIA96 is one of ~100 families of copia-like LTR-retrotransposons, which were active in the A. thaliana genome during last 20 Myrs. ATCOPIA88 is the closest family to ATCOPIA96; there is only a 72% identity between ATCOPIA88_I and ATCOPIA96_I. A few false stop-codons and frameshifts have damaged ORF which encoded originally an intact copia-like polyprotein.
Derived:
Positions 8778 13283 Accession No AC006219 GenBank
Download Sequence - Format:
IG, EMBL, FASTA
References:

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