Repbase Reports

2001, Volume 1, Issue 4
April 30, 2001
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 21

FORDPREFECT_A

Primate FORDPREFECT_A repetitive element - a consensus.

Submitted:
30-Apr-2001
Accepted:
30-Apr-2001
Key Words:
DNA transposon fossil; AcHobo family; FORDPREFECT_A
Source:
consensus
Organism:
Homo sapiens
Taxonomy:
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria
[1] Authors:
Smit,A.F.A. and Hubley,R.M.
Title:
A few more common, ancient interspersed repeats in the human genome.
Journal:
Repbase Reports 1:(4) p.21 (2001)
Abstract:
FORDPREFECT_A is an internal deletion product of FORDPREFECT. It had (at least) 41 CpG dimers, basically representing a mobile CpG island. Average divergence level of copies to consensus is 27% (22% outside CGs, ~25% substitution level).
Derived:
[1] (consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Smit,A.F.A. and Hubley,R.M.
    A few more common, ancient interspersed repeats in the human genome.
    Direct submission (November 30, 2001)

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