Repbase Reports |
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| 2001, Volume 1, Issue 4 |
| April 30, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 20 |
FORDPREFECT |
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Primate FORDPREFECT repetitive element - a consensus. |
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Submitted: 30-Apr-2001 |
Accepted: 30-Apr-2001 |
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Key Words: DNA transposon fossil; HAT family; FORDPREFECT, ZAPHOD |
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Source: consensus |
Organism: Homo sapiens |
Taxonomy: Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria |
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| [1] |
Authors: Smit,A.F.A. and Hubley,R.M. |
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Title: A few more common, ancient interspersed repeats in the human genome. |
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Journal: Repbase Reports 1:(4) p.20 (2001) |
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Abstract: FORDPREFECT is a hAT-class element with 8 bp target site dups. It has about 1300 copies in human genome, including FORDPREFECT_A. The first 66 bp of FORDPREFECT are 90%, and the last 36 bp are 80% identical to those of ZAPHOD. It does not seem to have had coding capacity and perhaps hitchhiked with ZAPHOD. The average divergence level of copies to the consensus is 22% (20% outside CG, ~24% substitution level).
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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