Repbase Reports

2001, Volume 1, Issue 4
April 30, 2001
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 16

ATMU10

A molecular fossil of the ATMU10 autonomous DNA transposon.

Submitted:
30-Apr-2001
Accepted:
30-Apr-2001
Key Words:
autonomous DNA transposon; MUDR superfamily; TIR; transposase; DNA binding protein; ATMU10
Source:
Arabidopsis thaliana
Organism:
Arabidopsis thaliana
Taxonomy:
Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Dilleniidae; Capparales; Brassicaceae
[1] Authors:
Kapitonov,V. and Jurka,J.
Title:
The ATMU10 family of MuDR-like transposons.
Journal:
Repbase Reports 1:(4) p.16 (2001)
Abstract:
ATMU10 is a fossil of an autonomous DNA transposon from the MuDR superfamily. ATMU10 is flanked by 95% identical 340-bp TIRs, and by 10-bp TSD. ATMU10 represents one of tens MuDR-like families present today in the A. thaliana genome. Exons that encode the ATMU10 transposase (~ positions 1000-3000) and putative DNA-binding proteins (~ positions 4350-3800) are damaged by a few mutations accumulated in the ATMU10 copy since its insertion into the genome.
Derived:
Positions 30888 35590 Accession No AC006528 GenBank (rel. 124.0)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Kapitonov,V. and Jurka,J.
    The ATMU10 family of MuDR-like transposons.
    Direct submission (December 05, 2001)

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