Repbase Reports |
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| 2001, Volume 1, Issue 4 |
| April 30, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 10 |
ATHILA7_I |
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ATHILA7_I is an internal portion of ATHILA7 endogenous retrovirus - a fossil. |
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Submitted: 30-Apr-2001 |
Accepted: 30-Apr-2001 |
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Key Words: Gypsy-like endogenous retrovirus; Athila superfamily; internal portion; ORF1; pol; reverse transcriptase; ATHILA7LTR; ATHILA7_I |
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Source: thale cress |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryotae; mitochondrial eukaryotes; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; Magnoliopsida; Capparales; Brassicaceae; Arabidopsis |
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| [1] |
Authors: Kapitonov,V. and Jurka,J. |
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Title: The ATHILA7 family. |
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Journal: Repbase Reports 1:(4) p.10 (2001) |
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Abstract: ATHILA7_I is an internal portion of ATHILA7 endogenous retrovirus. It belongs to the gypsy superfamily and is related to the ATHILA-like endogenous retroviruses. ATHILA7_I is flanked by 7% divergent ATHILA7LTR long terminal repeats. Therefore this element has been inserted in the genome relatively long time ago; the same is cofmirmed by multiple stop codons disrupting three ORFs, which encode remnants of the ATHILA ORF1-like protein, reverse transcriptase and a hypothetical protein, correspondingly. Interestingly, there is one proviral copy of a very young retrovirus (AB005248, positions 24125-35848) that has LTRs and internal portion 91% and 93% identical to ATHILA7LTR and ATHILA7_I, correspondingly. This element is flanked by 100% identical LTRs, and its internal portion is not saturated by as many false stop codons as it happened in ATHILA7.
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Derived: Positions 12598 2611 Accession No AF272705 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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