Repbase Reports

2001, Volume 1, Issue 4
April 30, 2001
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 2

ATCOPIA93_I

Internal region of the ATCOPIA93 copia-like LTR-retrotransposon.

Submitted:
30-Apr-2001
Accepted:
30-Apr-2001
Key Words:
LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; the ATCOPIA93 family; ATCOPIA93LTR; ATCOPIA93_I
Source:
Arabidopsis thaliana
Organism:
Arabidopsis thaliana
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Internal portion of the ATCOPIA93 copia-like LTR-retrotransposon.
Journal:
Repbase Reports 1:(4) p.2 (2001)
Abstract:
ATCOPIA93_I is an internal region of the ATCOPIA93 copia-like endogenous retrovirus flanked by the 96% identical ATCOPIA93LTR long terminal repeats and a 5-bp target-site duplication (CAGCC). ATCOPIA93 forms a separate family of copia-like retroviruses present in the A. thaliana genome since members of other families are less than 75% identical to ATCOPIA93_I. Chromosome 4 (AL161500, 110753-116088) harbors the ATCOPIA93A provirus whose identical LTRs and internal portion are 88% and 91% identical to these in ATCOPIA93. ATCOPIA93A is a subfamily of ATCOPIA93. ATCOPIA93_I encodes remnants of the ATCOPIA93p copia-like polyprotein. The ORF which encodes ATCOPIA93p is damaged by 5 false stop codons and by 5 frame shifts induced by indels.
Derived:
Positions 33043 28494 Accession No AC006423 GenBank (rel. 124.0)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Kapitonov,V.V. and Jurka,J.
    Internal portion of the ATCOPIA93 copia-like LTR-retrotransposon.
    Direct submission (December 05, 2001)

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