Repbase Reports

2001, Volume 1, Issue 3
March 31, 2001
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 14

ATCOPIA85_I

Internal region of the ATCOPIA85 copia-like LTR-retrotransposon - a partial copy.

Submitted:
31-Mar-2001
Accepted:
31-Mar-2001
Key Words:
LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; the ATCOPIA85 family; ATCOPIA85LTR; ATCOPIA85_I
Source:
Arabidopsis thaliana
Organism:
Arabidopsis thaliana
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Internal portion of the ATCOPIA85 copia-like LTR-retrotransposon.
Journal:
Repbase Reports 1:(3) p. 14 (2001)
Abstract:
ATCOPIA85_I is an internal region of the ATCOPIA85 copia-like endogenous retrovirus. ATCOPIA85 forms a separate family of copia-like retroviruses present in the A. thaliana genome. The only proviral copy is without the 5' LTR; approximately 1 kb of the internal portion is also lost. The 3' LTR is in place, we identified it based on a 95% identity to its copy present in AC023279. ATCOPIA85_I encodes remnants of the ATCOPIA85p copia-like polyprotein. The ORF which encodes ATCOPIA85p does not have false stop codons. Therefore, ATCOPIA85 is a young retrovirus.
Derived:
Positions 19551 23172 Accession No AB025622 GenBank (rel. 124.0)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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