Repbase Reports

2001, Volume 1, Issue 3
March 31, 2001
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1

ATCOPIA18A_I

Internal region of the ATCOPIA18A copia-like LTR-retrotransposon.

Submitted:
31-Mar-2001
Accepted:
31-Mar-2001
Key Words:
LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; the ATCOPIA18A family; ATCOPIA18ALTR; ATCOPIA18A_I
Source:
Arabidopsis thaliana
Organism:
Arabidopsis thaliana
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Internal portion of the ATCOPIA18A copia-like LTR-retrotransposon.
Journal:
Repbase Reports 1:(3) p. 1 (2001)
Abstract:
ATCOPIA18A_I is an internal region of the ATCOPIA18A copia-like endogenous retrovirus flanked by the 99% identical ATCOPIA18ALTR long terminal repeats, and a 5-bp target-site duplication (GTGTT). ATCOPIA18A is a subfamily of the ATCOPIA18 family. There is a 77% identity between the ATCOPIA18A_I and ATCOPIA18I internal sequences. ATCOPIA18A_I encodes remnants of the ATCOPIA18Ap copia-like polyprotein. The ORF which encodes ATCOPIA18Ap is slightly damaged by false stop codons and other mutations.
Derived:
Positions 54058 49009 Accession No AB025602 GenBank (rel. 124.0)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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