Repbase Reports

2001, Volume 1, Issue 2
February 28, 2001
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 38

ATDNA2T9B

Non-autonomous DNA transposon ATDNA2T9B - a consensus sequence.

Submitted:
28-Feb-2001
Accepted:
28-Feb-2001
Key Words:
non-autonomous DNA transposon; MuDr; VANDAL; ATDNA2T9B
Source:
consensus
Organism:
Arabidopsis thaliana
Taxonomy:
Eukaryota; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Non-autonomous DNA transposon ATDNA2T9B - a consensus sequence.
Journal:
Repbase Reports 1:(2) p. 38 (2001)
Abstract:
ATDNA2T9B is a non-autonomous DNA transposon. ATDNA2T9B copies are flanked by 9-bp target site duplications generated upon its integration in the genome. There are 3 copies of ATDNA2T9B in the genome; they are 99% identical to the ATDNA2T9B consensus sequence. An autonomous transposon involved in a proliferation of ATDNA2T9B is expected to be related to VANDAL-like megatransposons. A left arm of the ATDNA2T9B consensus sequence, position 1-915, is ~100% identical to the corresponding arm of the ATDNA2T9A consensus sequence. However, there is only a 67% identity between the remaining portions of the ATDNA2T9A and ATDNA2T9B consensus sequences.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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