Repbase Reports

2001, Volume 1, Issue 2
February 28, 2001
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 36

ATCOPIA77_I

Internal region of ATCOPIA77 copia-like LTR-retrotransposon.

Submitted:
28-Feb-2001
Accepted:
28-Feb-2001
Key Words:
LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; ATCOPIA77LTR; ATCOPIA77_I
Source:
Arabidopsis thaliana
Organism:
Arabidopsis thaliana
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Internal region of ATCOPIA77 copia-like LTR-retrotransposon.
Journal:
Repbase Reports 1:(2) p. 36 (2001)
Abstract:
ATCOPIA77_I is an internal region of the ATCOPIA77 copia-like endogenous retrovirus flanked by the 97% identical ATCOPIA77LTR long terminal repeats, and a 5-bp target-site duplication (CTTTG). ATCOPIA77_I's CDS, which encodes remnants of the ATCOPIA77p copia-like polyprotein, is slightly damaged by false stop codons and other mutations. ATENSPM1A transposon is inserted into ATCOPIA77_I and flanked by the CTA target site duplication. ATENSPM1A and the CTA repeat are removed from the ATCOPIA77_I sequence described here.
Derived:
beg: Positions 5552 1 Accession No AC006841 GenBank (rel. 124.0)
end: Positions 16697 20193 Accession No AC007210 GenBank (rel. 124.0)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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