Repbase Reports |
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| 2001, Volume 1, Issue 2 |
| February 28, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 34 |
ATCOPIA76_I |
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Internal region of ATCOPIA76 copia-like LTR-retrotransposon. |
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Submitted: 28-Feb-2001 |
Accepted: 28-Feb-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; ATCOPIA76LTR; ATCOPIA76_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal region of ATCOPIA76 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(2) p. 34 (2001) |
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Abstract: ATCOPIA76_I is an internal region of the ATCOPIA76 copia-like endogenous retrovirus flanked by the 99% identical ATCOPIA76LTR long terminal repeats, and a 5-bp target-site duplication (GGTTT). ATCOPIA76_I encodes the 1361-aa ATCOPIA76p copia-like polyprotein A corresponding CDS is interrupted by a copy of ATGP2NLTR1, which is flanked by the GACAT target site duplication. The ATGP2NLTR1 and one the GACAT repeat were removed from the ATCOPIA76_I nucleotide sequence. ATCOPIA76p: MSAARIEVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRRELLEEK RRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFKMSENLSIEGNIDEF LRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEVVAAIYSKELELGSNKKSI KGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSKSRSKKGCWICGEEGHFKSSCPNKNKTQPQTKTTNNN NKGESSNGSSNYSEANGLYVSEALSSTDIHLEDEWVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTV SKVRGIGTIRVKNEAGMVVRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCY TLYLLQWRPVTEESLSVVKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKAKRI GFNLAQHDTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDEAFDKFVEWANLVE NQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGVAERMNRTLMEKVRSMLSDSGLPK KFWAEATHTTAILINKTPSSALNYEVPDKRWSGKSPIYSYLRRFGCIAFVHTDDGKLNPRAKKGILVGYP IGVKGYKIWLLEEKKCVVSRNVIFQENASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPI VEAQSPFNPSPATTQTYSEGVNSETDIIQSPLSYQLVRDRDRRTIRAPVRFDDEDYLAEALYTTEDSGEI EPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYKFKLGIPGVEEGRFKARL VAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLELEQLDVKTAFLHGELKEKIYMVPPEGYEEMF KEDEVCLLNKSLYGLKQAPKQWNEKFNAYMSEIGFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKN KEDISQLKEELSQRFDMKDLGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAH LKMRAATVEKQEQDEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYI KGSLGTKLQYKRSSDFKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVVALSTTEAEYMSL TEAVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVRYQYIRDIIANGDGDVVKI DTEKNPADIFTKIVPVNKFQAALTLLQVKPE
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Derived: Positions 95983 89644 Accession No AC006841 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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