Repbase Reports

2001, Volume 1, Issue 2
February 28, 2001
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 28

ATCOPIA72_I

Internal region of ATCOPIA72 copia-like LTR-retrotransposon.

Submitted:
28-Feb-2001
Accepted:
28-Feb-2001
Key Words:
LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; ATCOPIA72LTR; ATCOPIA72_I
Source:
Arabidopsis thaliana
Organism:
Arabidopsis thaliana
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Internal region of ATCOPIA72 copia-like LTR-retrotransposon.
Journal:
Repbase Reports 1:(2) p. 28 (2001)
Abstract:
ATCOPIA72_I is an internal region of the ATCOPIA72 copia-like endogenous retrovirus flanked by the identical ATCOPIA72LTRs and a 5-bp target-site duplication (GGTGA). ATCOPIA72_I encodes the 1471-aa ATCOPIA72p copia-like polyprotein. ATCOPIA72p: MVPGIRVTRKSARSKVSTGSVARKSSKSTGVLDSASDSPPMARSQTAGASRGVFSSGFDDPTQSPFFLHS ADHPGLSIISHRLDETTYGDWSVAMRISLDAKNKLGFVDGSLPRPLESDPNFRLWSRCNSMVKSWLLNSV SPQIYRSILRLNDATDIWRDLFDRFNLTNLPRTYNLTQEIQDLRQGTMSLSEYYTLLKTLWDQLDSTEAL DDPCTCGKAVRLYQKAEKAKIMKFLAGLNESYAIVRRQIIAKKALPSLAEVYHILDQDNSQKGFFNVVAP PAAFQVSEVSHSPITSPEIMYVQSGPNKGRPTCSFCNRVGHIAERCYKKHGFPPGFTPKGKSSDKPPKPQ AVAAQVTLSPDKMTGQLETLAGNFSPDQIQNLIALFSSQLQPQIVSPQTASSQHEASSSQSVAPSGILFS PSTYCFIGILAVSHNSLSSDTWVIDSGATHHVSHDRKLFQTLDTSIVSFVNLPTGPNVRISGVGTVLINK DIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLDTQSPAISV NAVVDVSVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHI DVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKELA FTEFYKAKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALL SNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHIS RNVEFHEELFPLASSQQSATTASDVFTPMDPLSSGNSITSHLPSPQISPSTQISKRRITKFPAHLQDYHC YFVNKDDSHPISSSLSYSQISPSHMLYINNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITS LPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWY LNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGF EKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSE GISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAV NKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGS SLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLSTLLLALRVHSGVPILYSDSTAAVYIATNPVFHER TKHIEIDCHTVREKLDNGQLKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSIQNIFVFS
Derived:
Positions 16028 11546 Accession No AC007109 GenBank (rel. 124.0)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2019 - Genetic Information Research Institute