Repbase Reports |
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| 2001, Volume 1, Issue 2 |
| February 28, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 6 |
ATCOPIA54_I |
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Internal region of ATCOPIA54 copia-like LTR-retrotransposon. |
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Submitted: 28-Feb-2001 |
Accepted: 28-Feb-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; ATCOPIA54LTR; ATCOPIA54_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal region of ATCOPIA54 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(2) p. 6 (2001) |
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Abstract: ATCOPIA54_I is an internal region of the ATCOPIA54 copia-like endogenous retrovirus flanked by the 7% divergent ATCOPIA54LTR long terminal repeats, and by a 5-bp target-site duplication (AATTT). ATCOPIA54_I encodes remnants of the ATCOPIA54p copia-like polyprotein. A long fragment of ATCOPIA54_I (positions 133-3949) is inverted in the genome and is flanked by a 80-bp inverted repeat (positions 53-132 and 3950-4029). The ATCOPIA54_I sequence reported here represents a reconstructed prototype of the ATCOPIA54 provirus followed by the invertion. The reconstruction is defined below in DR lines.
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Derived: Positions 151204 151255 Accession No AL161507 GenBank (rel. 124.0) Positions 155152 151336 Accession No AL161507 GenBank (rel. 124.0) Positions 155153 155400 Accession No AL161507 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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