Repbase Reports

2001, Volume 1, Issue 2
February 28, 2001
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 6

ATCOPIA54_I

Internal region of ATCOPIA54 copia-like LTR-retrotransposon.

Submitted:
28-Feb-2001
Accepted:
28-Feb-2001
Key Words:
LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; ATCOPIA54LTR; ATCOPIA54_I
Source:
Arabidopsis thaliana
Organism:
Arabidopsis thaliana
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Internal region of ATCOPIA54 copia-like LTR-retrotransposon.
Journal:
Repbase Reports 1:(2) p. 6 (2001)
Abstract:
ATCOPIA54_I is an internal region of the ATCOPIA54 copia-like endogenous retrovirus flanked by the 7% divergent ATCOPIA54LTR long terminal repeats, and by a 5-bp target-site duplication (AATTT). ATCOPIA54_I encodes remnants of the ATCOPIA54p copia-like polyprotein. A long fragment of ATCOPIA54_I (positions 133-3949) is inverted in the genome and is flanked by a 80-bp inverted repeat (positions 53-132 and 3950-4029). The ATCOPIA54_I sequence reported here represents a reconstructed prototype of the ATCOPIA54 provirus followed by the invertion. The reconstruction is defined below in DR lines.
Derived:
Positions 151204 151255 Accession No AL161507 GenBank (rel. 124.0)
Positions 155152 151336 Accession No AL161507 GenBank (rel. 124.0)
Positions 155153 155400 Accession No AL161507 GenBank (rel. 124.0)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2019 - Genetic Information Research Institute