Repbase Reports

2001, Volume 1, Issue 1
January 31, 2001
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 14

ATCOPIA56_I

Internal region of the ATCOPIA56 copia-like LTR-retrotransposon - a consensus sequence.

Submitted:
31-Jan-2001
Accepted:
31-Jan-2001
Key Words:
LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; ATCOPIA56LTR; ATCOPIA56_I
Source:
consensus
Organism:
Arabidopsis thaliana
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Internal region of the ATCOPIA56 copia-like LTR-retrotransposon - a consensus sequence.
Journal:
Repbase Reports 1:(1) p.14 (2001)
Abstract:
ATCOPIA56_I is a consensus sequence of an internal region of ATCOPIA56 copia-like endogenous retrovirus. There are three copies of ATCOPIA56_I present in the genome; they are 99% identical to the consensus sequence, and are flanked by ~2% divergent ATCOPIA56LTR LTRs and 5-bp target-site duplications. ATCOPIA56_I encodes the 1358-aa ATCOPIA56p copia-like polyprotein. ATCOPIA56p: MSSGRAEVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAEVEDSTTEISDGGNQDPETATSKLEDK ILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQRLYGYKMSENMTMEE NVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYCKTTLHLEEITSAIRSKILELGASG KLLKNNSDGLFVQDRGRSETRGKGPNKNKSRSKSKGAGKTCWICGKEGHFKKQCYVWKERNKQGSTSERG EASTVTAQVTDAAALVVSRALLGFAEVTPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEV KGIGDVRIKNEDGSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKESTLY FLQGTTLAGEANVIDKEKDETSLWHSRLGHIGAKGLQVLVSKGHLDKNMIKDLQFCEDCVYGKTRRVSFG AAKHVTKDKLDYVHSDLWGSPNVPFSIGKCQYFITFIDDFTRRTWIYFIRTKDEAFSKFVEWKTQIENQQ DKKLKILRTDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQNGVAERMNRTIMNKVRCMLSESGLGKQFW AEAASTAVFLINKSPSSSIEFDIPEEKWTGHPPDYKILKKFGSVAYIHSDQGKLNPRAKKGIFLGYPDGV KGFKVWLLEDRKCVVSRDIVFQENQMYKELQKNDMSEEEKQLTEVERTLIELKNLSADDENQSEGGDKSN QEQASTTRSASKDKQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPE TYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAK GFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTE KVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQ IQKLKESLNREFEMKDLGPARKILGMEITRNREQGTLDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKL RAANEKTLARDAEYMKSVPYPNAIGSIMYSMIGSRPDLAYHVGVVSRFMSKPSKEHWQAVKWVMRYMKGT QDTCLRFKKDDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEYMALAEA VKEAIWLRGLAAEMGFEQDAVEVMCDSHNAIALSKNSVHHERTKHIDVRYHFIREKIADGEIQVVKVSTT WNPADIFTKTVPVSKLQEALKLLRVSSN
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Kapitonov,V.V. and Jurka,J.
    Direct submission (August 2001)

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