LOCUS Transib1_SP 4132 bp DNA linear INV 01-APR-2005 DEFINITION Strongylocentrotus purpuratus Transib transposon (Transib1_SP),genomic sequence. ACCESSION VERSION KEYWORDS . SOURCE Strongylocentrotus purpuratus ORGANISM Strongylocentrotus purpuratus Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus. REFERENCE 1 (bases 1 to 4132) AUTHORS Kapitonov,V.V. and Jurka,J. TITLE RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons JOURNAL PLoS Biol. (2005) 3, e181. COMMENT This record uses data from DDBJ/EMBL/GenBank entry AAGJ01000000 This transposon was identified based on computational studies. It encodes the Transib-like transposase and is characterized by terminal inverted repeats and 5-bp target site duplications, which are characteristics of known Transib transposons. FEATURES Location/Qualifiers source 1..4132 /organism="Strongylocentrotus purpuratus" /mol_type="genomic DNA" /db_xref="taxon:7668" repeat_unit join(1..38,4095..4132) /note="terminal inverted repeat" gene 833..3310 /gene="Transib1_SP1" CDS join(833..1703,2151..3310) /gene="Transib1_SP1" /note="Transib transposase" /codon_start=1 /product="Transib1_SP1p" /translation="MWVTSQTSHKKLLKSLSKTIGRFLYRMREKWNKCGRRQEYFMKE NEDWLNQTLTFNTEVETFLAQQNSTDTGTETEPTSDLPGTSQGASNVGRPAKNWDTLS DRSKKRKAHHLLEDREPEELLYAASQGVYKKNSSLKYVLKFAMLTPSRPAKIRKLISE KKKEPLKFSSEEALSLLVETGMTKQAYQTTRLAAKGKNADIYPPYNEIREAKEKCYPN DISVTEDSGKVPLQSLLDHTALRIIQEQKDTITQVIENLEEDEQFNCELVCKWGFDQT AHQATVNTKQKSTAGTLDDSSIFCTTLVPLQLKVKDSILWQNPVPSSSRFCRPIHLQF KKETTELSQEEYRSVQDEIKKLQPMNVSLDIDYELAADLNRNYNIQINYELHFTMMVD QKVVNALTETKSSMRCYVCGATPKQFNDIEKLPSASNEEAYSYGLSPLHKWIRCFEMC IHIAYRITIKKWRVSTENDKAVVAAQKKKIHDRFKEEMGLKVDEPKQGSGNTNDGNTA RRAFQEEDTFADICGLDLNLVHRIHMILVAISCKSSLNPVRFGDYCRRTAEIYVQLYP WYKMPVSVHVLLLHGSTILACSVLPIGMMSEEAQEARNKDNKVYRRKFARKTSRVDNM SDVFHRLMVTGDVAISLLSLKTPRPRTLPREVQEMLKDFRVIQDNDSPDSDS" BASE COUNT 1404 a 771 c 774 g 1183 t ORIGIN 1 cacagtgggc cagaatcgcc taaaagtgtg ccaaaattca aaattggcga atgtgaattt 61 ttatattttt ttcattcgct ttgggaagaa aacattctaa agaatatttt tctacccata 121 ttttaatatt tagcgagttt taaaagtgtc attatacccc gaacatggga aaatctatat 181 gttgctctaa aaatgataaa aaggtaactt tacactaggt gttgagaatg tataaaggga 241 aaagcaatca acttgatact gcgtgcactt cttgcctatt ggtaacccaa ttagaaaata 301 caatgaccaa atttttggaa gcttcctttt gggaaaaatg agcatttaat ttcacacaaa 361 aaggggaaaa atgcaatatc tatataaaag tagcatatta attaggattc cggccgattc 421 ccgcagtaat gttaatctca aaatgtctgc ctaagctttc catgtatggt atttcttttt 481 gccagaattt gctacactgc atgtgcaggc gcttttcctc cccacgtcca tctattatta 541 ttaggcataa tcggtacaat tttgtactgt ttacgcacag tcgattcaac tctcgtccgc 601 gtaaccatgg caacggttac gtgagtgtag agcgtgtagc gtagtgtata ttgctttcac 661 acgttgatgc aattcggaat catatatgat atcattctag gagaacttgg attgaaataa 721 acgatggcgg tattaagaag acagcttttt catgctgtgc attcagctgg cttcatttca 781 gacatcaaac tggcatccaa aacatccatt gatgcattat gtgcatatca taatgtgggt 841 aacaagtcaa acatcccaca aaaaacttct caagagtttg tcaaagacta ttggacgctt 901 tctgtatcgt atgcgagaga aatggaacaa gtgtggtcgt cgccaggaat atttcatgaa 961 agaaaacgag gactggctta atcagacatt gacattcaat actgaagtag aaacatttct 1021 tgcacagcaa aacagcacag ataccgggac agaaacagag ccaacttcag acttgccagg 1081 cacgtcacag ggcgcatcca atgtgggacg tccagctaag aattgggaca ctctctcaga 1141 tcgttctaaa aaaagaaaag cacaccacct tctagaagac agggaaccag aggaacttct 1201 atatgcggca tctcaaggcg tgtataagaa aaattcaagt ttgaaatatg tgttgaaatt 1261 cgcaatgcta acaccatcaa gaccagctaa aataagaaaa ctgatatcag aaaaaaagaa 1321 agaaccatta aaattctcaa gtgaagaagc tttgtcactt ttagttgaaa caggaatgac 1381 aaaacaggca taccaaacaa ccagacttgc tgcaaaaggt aaaaatgctg atatttatcc 1441 accgtataac gagattaggg aagctaagga aaaatgttat cccaatgaca tctcagtcac 1501 ggaagactct gggaaagtac ccctacaaag cctcttagac cacactgcac ttcggataat 1561 tcaggagcag aaggacacta tcacgcaagt cattgaaaat ttagaagaag atgaacagtt 1621 caattgtgaa ttggtgtgca aatggggctt tgaccagacg gctcatcagg ccacagtaaa 1681 tactaaacag aagtctactg caggtacgtg ttttctcctt tccaccctac agagctaaat 1741 gcgtttattc ttttttttat cagagagacc aacatcatca ttaaagctga ttcatgaaac 1801 aaataaaaaa aaaaaaagga catatcttaa gtaaaataaa aacacatggt tttaatgctc 1861 caacaattaa acaagcttag gtttccatta atatttattt cctgataatt atatatatat 1921 ttcttatgag caatgatatt ttatgttttg ataaaataaa taatcaaagc ctccaaatgt 1981 tgggataata tagatacatt tggacgtata tagatacatt tggacgtaca tgatgtatga 2041 gtataacatt ttaagtttca ttctgatgaa attttaaagt aattttgaat tcatgtttgc 2101 tgtacacgat tatgcatttc tgacataata attttatttt tctactgcag gtactttgga 2161 tgacagcagc atattctgca ctactctagt tccgctgcaa ttgaaggtaa aagacagtat 2221 tttgtggcaa aatccggttc cttcttcgtc aagattttgc cgacccattc atcttcaatt 2281 caagaaagaa acaactgaac tctctcagga agagtataga tctgttcaag atgaaatcaa 2341 gaaattgcaa cctatgaacg tatctttgga cattgattat gagctggcag cagatctaaa 2401 taggaactac aacatacaga ttaactatga attgcacttc accatgatgg tagatcagaa 2461 agtcgtgaat gctctgacag aaaccaagtc atctatgcga tgctatgtct gtggggctac 2521 tcccaaacag ttcaatgaca tagagaaact tccctccgcg tcaaatgagg aagcttatag 2581 ctatggactc tcacctctac ataaatggat cagatgtttt gagatgtgta ttcacattgc 2641 ttacagaatt acgattaaaa agtggcgtgt ttcaactgaa aatgacaaag ctgtcgtcgc 2701 tgctcagaag aagaaaatac acgatcgctt caaagaggaa atgggtctta aagtagatga 2761 accgaaacaa ggatcgggaa atacaaacga tgggaacact gcacgcagag cattccaaga 2821 ggaggacacc tttgctgaca tttgcgggtt agatttgaac ttagtacata ggattcacat 2881 gatcttagta gcaatttctt gcaaatcctc tctaaatcca gtacgatttg gagactattg 2941 tcgcagaaca gcagaaatct atgtacaact ctacccatgg tataaaatgc ctgtgagtgt 3001 gcatgtactg ctgcttcacg gctctaccat tcttgcttgt tcagttctac cgatcgggat 3061 gatgagcgaa gaagctcaag aagccagaaa caaggacaac aaggtataca gaaggaaatt 3121 tgcaagaaag acatcaagag tagacaatat gagtgacgtg ttccaccgtc ttatggttac 3181 aggcgatgtt gccatcagtc ttttatcact taaaactcca cggccaagaa ccctgccacg 3241 tgaagtccaa gagatgctga aagactttcg ggtcattcaa gacaatgatt ctccagacag 3301 tgactcgtaa tgagaagcaa aaggacccat acatagagat atggcaaaaa cgttataaaa 3361 cgttcaaggg tatttcatat ttttaaatca taatcattta tttgattata ttccaaatcc 3421 ctttgaacat cttctgaaat caatcgatgt ctcattcttt aaattcatat ggaaagggaa 3481 acccgataca ataaacagaa aacaagtagt ttgtaaatac gaaaatagtg gactaaaaat 3541 agttgatgcc ggacaatttt atagagagaa atttaaaaat gctccaattg tgcgtcttag 3601 gtccagaaac ccctgaaaag tttccctagt cagtgtcata tgaatctgtt tatgtgttac 3661 aatgcatgtt ggccttttcc aatcagaaaa ctgtatttta atgacgtgag agaaatttga 3721 aaatgctcca atagtgtttc ttaggtccag aaacccctta taagttccac taatcagtgt 3781 aatatgaatc tgtctatgcg ttacaatgaa tatttgcctt gtccaatcag aaaacagtat 3841 tttaatgacg tcagagaaat ttgaaaatgc tccaattgtg tttttttagg tccagaaacc 3901 ccttataagt tccactaatc agtgtaatat gaatttgtct atgcgttaca atgaatattt 3961 gccttgtcca atcagaaaac agtattttga tgacgtcaca cggatttgaa aatactccca 4021 tcgaattcta ttggtctgaa aaccccttac atactttaac caggaacttc attaaccttc 4081 ttcaatgaga aattaatttt ggcacacttt gaggcggttc tggcccactg tg //