LOCUS       RAG1L_NV            1585 bp    DNA     linear   INV 01-APR-2005
DEFINITION  Nematostella vectensis RAG1 core-like pseudogene (RAG1L_NV),
            partial sequence.
ACCESSION   
VERSION
KEYWORDS    .
SOURCE      Nematostella vectensis
  ORGANISM  Nematostella vectensis
            Eukaryota; Metazoa; Cnidaria; Anthozoa; Zoantharia; Actiniaria;
            Edwardsiidae; Nematostella.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Kapitonov,V.V. and Jurka,J.
  TITLE     RAG1 core and V(D)J recombination signal sequences were derived
            from Transib transposons
  JOURNAL   PLoS Biol. (2005) 3, e181.
COMMENT     TPA accession numbers: TI668021618 TI558173651 TI568641192 TI599572062
            This sequence was assembled from WGS sequences deposited 
            into Trace Archive (TPA) by JGI.It encodes a RAG1 core-like protein.
PRIMARY     TPA_SPAN            PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-859               TI599572062        127-987
            410-1379            TI568641192        22-987
            607-1585            TI668021618        46-1022             c
            823-1585            TI558173651        52-813
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Nematostella vectensis"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:45351"
     gene            <1..>1585
                     /gene="RAG1L_NV"
                     /pseudo
     CDS             <1..>1585
                     /gene="RAG1L_NV"
                     /note="CDS contains two internal stop codons and one frame
                     shift.  [intronless gene] ; RAG1 core-like/Transib
                     transposase"
                     /pseudo
                     /codon_start=1
                     /product="RAG1L_NV"
BASE COUNT      479 a    310 c    355 g    441 t
ORIGIN      
        1 cctgaacatt tagtttcaat acttgtatgt tctatttgta tgggagtgcc aagcacccca
       61 gttgtcacac aatgtgacca aattttctgt agtggctgta taacagcctg gctgcgaaat
      121 gcaggggctt gctcttcctg taggtcagtt ttagaggttt cagatataga tcctttaaaa
      181 ggtccactct taaacatcta ttctctagtc aaaatcaagt gtgcattttc atgtattggc
      241 tgcttagagg ttttggctat aaaaaatttg aaggattatg aatctttgtg tcctgctaga
      301 catggcaaac ttcctcgtaa aaaagaaact aggactagca atccatttaa ggagccactt
      361 atttctgtca ctgctaagta tgcaaggcaa aaaagacttc agggaattat tggcatgctt
      421 aattcatttt gcaaggaaca atttgaggat aagggtgatg ttttgttttt ccttttgtgc
      481 cagcaccttc gagacactca agatgagagg gcttctagta ttgatggact ttgacaaagg
      541 ctatcataca gcctaactac agaccaatgt ttggcactgc gtgttgacac tctccaaacg
      601 aaaggtcagt acaaagcgca gtatgatttt ctgaagcaga aactggctat cacagtttta
      661 aagccaccac ttgctgtgtc agaaagtgag ctggcataca tgccgggctc agttaggtat
      721 atggtggaag ctgaagaccc attgttgtct tactaccaca caccagttta gcaaagtggg
      781 ccagtagcaa gtggatttag tgctgaccct tcatgtgaac ctatcaatat ccttcaagat
      841 tttaatgatt caattcctga gttcccaaca ccaaatgtca aaggagtcag gtttaggttt
      901 accgatgccc ttgcaaaaac tcttgaggag ttagacccaa tagtgaagtc taaattgact
      961 gagcataatt tagatcctgc caccacttta ctcaagacaa ctgtaaagaa tggtgcagat
     1021 ggcatgggag atgtctctgt ttacaaagaa acaggtgaca ggtttctcac atgacaaagc
     1081 atttcgccat tcttttgcag tcatcaaaat tgaggcacta actaatggta atgtcattcc
     1141 tctctttctt gaagacgagc cgaactcggt tcgaactaac aggcctttgc ttgaagcaat
     1201 tgcagatgaa aataacaatg cgtctagttg tgtgtgtcta atcccatcag aggaggagaa
     1261 ggaatttctc aaagggaaac aactgaaaat tcaggtagat gctggtgagt ggagaactca
     1321 ccaagtcgtc tttcataatt caatgataga cgagaaactg gaccgtgctg aagggggttt
     1381 ggcaggcagt gggtccaggt atctctgcac attgtgtaag gccacaaggg agacagcgaa
     1441 aagagaaatt ggcagcttca gcatatgtcg gacataccag gaaaatgctg aaattgcaga
     1501 atatgtcaga acaaaccctg ataacctttc gaaggagcag ctagacacac ttgaacaagg
     1561 agttaagtct gcaccaattt taaag
//