LOCUS       RAG1L_HM             771 bp    DNA     linear   INV 01-APR-2005
DEFINITION  Hydra magnipapillata RAG1 core-like gene (RAG1L_HM), partial
            sequence.
ACCESSION   
VERSION
KEYWORDS    .
SOURCE      Hydra magnipapillata
  ORGANISM  Hydra magnipapillata
            Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroida; Anthomedusae;
            Hydridae; Hydra.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Kapitonov,V.V. and Jurka,J.
  TITLE     RAG1 core and V(D)J recombination signal sequences were derived
            from Transib transposons
  JOURNAL   PLoS Biol. (2005) 3, e181.
COMMENT     TPA accession numbers: TI647073738 TI666995387 TI688683890
            TI688948453 TI688654311. This sequence was assembled from WGS
            sequences deposited into Trace Archive (TPA).It encodes a RAG1 
            core-like protein.
PRIMARY     TPA_SPAN            PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-735               TI688683890        23-757              c
            1-222               TI688948453        600-821             c
            17-178              TI688654311        127-288
            112-771             TI647073738        362-1021            c
            185-771             TI688654311        313-899
            261-771             TI666995387        527-1038            c
            273-728             TI688948453        144-599             c
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Hydra magnipapillata"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6085"
     gene            <1..>771
                     /gene="RAG1L_HM"
     CDS             <1..>771
                     /gene="RAG1L_HM"
                     /note="RAG1 core-like/Transib transposase; [intronless
                     gene]"
                     /codon_start=1
                     /product="RAG1L_HM"
                     /translation="GRDHFEKKKDYEIRHGQTTCPIACSNVRSIQVLHGLLRSFDHFM
                     KVVVHMAAGVLTWKESKLNNNTTLLKEEKARLQEIIRVKTGINWDFAESTGQKGNTTT
                     GNVARKLLHNNAMRKVITDHISSQTDRKLVEKYGLLLSTILRAMSSGKKINIELYKQM
                     CQELNILLLQEFYWVSITPTLHKILAHSWELIEINDSTGLKSWSEEGMEANNKRLRYF
                     REKLSRKINQLVNIEDCFKRLWLGSDPLVAEERSKGLLF"
BASE COUNT      285 a    121 c    158 g    207 t
ORIGIN      
        1 ggacgggacc attttgaaaa aaaaaaggat tacgaaattc gacacggtca aactacatgt
       61 ccaattgcat gttcgaatgt taggtccatt caggttttac atggtttgct caggagcttt
      121 gatcatttta tgaaggtagt tgttcacatg gcggcaggtg tcttaacttg gaaagaatct
      181 aagttaaaca ataacacaac attgctgaaa gaagaaaaag caagactaca agaaattatc
      241 cgagttaaaa caggaataaa ttgggatttt gcagaatcaa ccggacaaaa gggcaataca
      301 acaactggaa atgttgccag aaaactttta cataataatg caatgcgaaa agttattaca
      361 gatcacatat caagtcaaac tgaccgcaaa ctagttgaaa agtatggctt gcttctttcc
      421 actattctga gagcaatgtc atctggtaaa aaaattaata ttgagctata caaacaaatg
      481 tgtcaggagc taaacatctt gcttctacaa gaattttatt gggtaagtat aactccaacg
      541 ctgcacaaaa ttcttgctca tagctgggag ttgatagaaa taaatgattc cacaggtttg
      601 aaatcttgga gtgaagaagg aatggaagct aataataagc gtctcagata cttcagggaa
      661 aaactatcaa gaaaaattaa tcaattggtc aatatagaag attgctttaa aagactttgg
      721 ctggggtctg acccattagt tgcagaagaa cggagcaaag ggctgttatt t
//