LOCUS       RAG1L_BF             945 bp    DNA     linear   INV 01-APR-2005
DEFINITION  Branchiostoma floridae RAG1 core-like gene (RAG1L_BF), partial
            sequence.
ACCESSION   
VERSION
KEYWORDS    .
SOURCE      Branchiostoma floridae (Florida lancelet)
  ORGANISM  Branchiostoma floridae
            Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae;
            Branchiostoma.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Kapitonov,V.V. and Jurka,J.
  TITLE     RAG1 core and V(D)J recombination signal sequences were derived
            from Transib transposons
  JOURNAL   PLoS Biol. (2005) 3, e181.
COMMENT     TPA accession numbers: TI543943730 TI538583629. This sequence was
            assembled from two WGS sequences deposited into Trace Archive by
            JGI (TI numbers 543943730 and 538583629). It encodes a RAG1
            core-like protein.
PRIMARY     TPA_SPAN            PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-785               TI543943730        5-787               c
            375-945             TI538583629        24-591
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Branchiostoma floridae"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:7739"
     gene            <1..>945
                     /gene="RAG1L_BF"
     CDS             <1..>945
                     /gene="RAG1L_BF"
                     /note="RAG1 core-like/Transib transposase; [intronless
                     gene]"
                     /codon_start=1
                     /product="RAG1L_BF"
                     /translation="CCFKPASCLLGKYTNIIFESLEPDSVLQDFDKGVPDLMCPNTKG
                     VRFSYINAVAKTLEEIDEDIVKGLEKLGLDPTNPSIIIHTLVKDEADGMGEVSVHKEK
                     ADKSLPDKALRFSFCILKCSVMHNGEEVTIFEEPKPNSVRSNRPIVECIGDENDASTV
                     NVCIGPVERERLVMKDKVMRVHITENIKRAHFLTFSNSMIDEKWDRSHGGLAGAGSRF
                     LCTICDAVRDEALQKTDSYCITRTLSNITETAAILRTNPNNLSDAALSQQAHRVKCDC
                     ETLLTTEPWERGIDATHADINMGNFFKTLIITILGKWPR"
BASE COUNT      297 a    173 c    220 g    255 t
ORIGIN      
        1 tgctgcttta agccagcaag ctgtctgctg ggaaaataca caaatataat atttgaaagc
       61 ctcgaaccag acagtgtatt gcaagacttt gataaaggtg tcccagatct catgtgtccc
      121 aataccaagg gtgttcggtt ttcatacatc aatgcagtgg caaagacgct agaagaaatt
      181 gatgaagata ttgtaaaggg tttagaaaag ttgggacttg atccgactaa tccatctata
      241 atcattcata ctttagttaa ggatgaggcc gacggcatgg gtgaagtttc ggttcacaaa
      301 gaaaaggctg acaagtcatt gccagacaag gctctgaggt tttcattttg tattttgaaa
      361 tgttctgtaa tgcacaatgg agaagaggtc acaatttttg aagaaccaaa acctaactct
      421 gtgcggtcaa accgtccaat agtagaatgt attggtgacg aaaatgatgc ctcaacagtt
      481 aatgtatgta ttggaccagt agaaagggag cgtcttgtta tgaaggacaa agtcatgaga
      541 gttcatatta cagaaaacat caaacgtgct catttcctaa ctttctccaa tagcatgata
      601 gatgagaagt gggataggtc ccacgggggt cttgctgggg caggctcaag atttctctgt
      661 acaatttgtg acgctgtacg ggatgaggcc cttcagaaaa cagactcata ctgtattacg
      721 aggactttgt ctaacattac agagacagct gccattcttc ggacaaatcc gaataatcta
      781 tctgatgctg ctttaagtca acaagctcac agagtaaagt gtgactgtga gactttgctc
      841 accacagagc catgggaaag ggggattgat gccacacatg cagacataaa catgggtaac
      901 tttttcaaaa ctttgattat tactatatta gggaagtggc ccagg
//