LOCUS 12509_SP 1435 bp DNA linear INV 01-APR-2005 DEFINITION Strongylocentrotus purpuratus RAG1 core-like pseudogene (12509_SP), genomic sequence. ACCESSION VERSION KEYWORDS . SOURCE Strongylocentrotus purpuratus ORGANISM Strongylocentrotus purpuratus Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus. REFERENCE 1 (bases 1 to 1435) AUTHORS Kapitonov,V.V. and Jurka,J. TITLE RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons JOURNAL PLoS Biol. (2005) 3, e181. COMMENT This sequence encodes remnants of the RAG1 core-like protein. FEATURES Location/Qualifiers source 1..1435 /organism="Strongylocentrotus purpuratus" /mol_type="genomic DNA" /db_xref="taxon:7668" gene <1..>1435 /gene="12509_SP" /pseudo CDS join(<1..1140,1355..>1435) /gene="12509_SP" /note="This is a putative pseudogene, it contains a copy of the DNA5-1_SP transposon and one internal stop codon. [intronless gene] ; RAG1 core-like/Transib transposase" /pseudo /codon_start=1 /product="12509_SP" repeat_unit 1151..1327 /gene="12509_SP" /note="transposon DNA5-1_SP" /pseudo BASE COUNT 447 a 288 c 356 g 344 t ORIGIN 1 atcatggcat cctggaatga cgaatttgtt caggaggtca ccgaggatca ttgtctggca 61 atgaggataa caacgatgac gtcaaaaact cgctacaaag agcagtacag acagatgagg 121 cacaatggca acaacatcct aatactgcgc catgtcttgg atgaggtgga aaaaaattat 181 atgccaggaa gcgtacggtt acgcctgcaa gggactacag acttgatcca tcacacacca 241 gttaaagttg gtcaggcaca cattgagtac agcccactgt ccttcgagcc agacgtgatt 301 caaagtgaga tgtaccctgg gtttgatgca ccacttccca actttcaggg cgtacattgg 361 gataactcgc atgcgttggc caaaactttg gaagaacaag agtctgacat cgccagcggg 421 ctacataagt gtggaattag cccggagaaa gacatacaga acctgatgac agtgaaggat 481 ggtgccgacg gcatgggaaa tagctcaatt tttagggaag caagtgatat actactccca 541 gataaggcat tcagagcagc attcgctatt atacgttgcg aggtaatgaa ggacggagag 601 agaacaaccg tatatgaacc gtctgacctc aattctgtga cgatcacgag gctgttaata 661 gggtgcactg gggatgagaa caattctgca tcggccaagt gcatgctgca cactatggag 721 aggcagaggg agctctccat caacatcaac aatagatgga gacggcacaa ggtcatgttt 781 tataacagca tgatagacga aaaattggac agggccgact gtggattgca agggagcggt 841 tcgaaatatc tgtacaccct gtgccaagca accaggcaag aggccagagc agctattgga 901 tctttcgaga ttgacagaag tgttgaagaa gtcctggaga cagcttcata tgtgatagtg 961 aatcctgaca aaaggccaag caatgaattg gctgacgccg cccagggtgt gaaagagttt 1021 ccggttttta tgtcaacccc aagatggaag ctacttgatg caactctcga cgacatcact 1081 tttggctcat ttttttaaaa gcttattatt tgtgaaatgg cgtggacatt ttcatgggaa 1141 ataacctgtg cagggaataa ttttcctcaa attttttgat tagcaatttc agccgatgga 1201 taaatatttc aaatgaaatt ctgtacattt ctatggaaga aaactgctac acaaaagata 1261 ttttgtatag cagtcatgca aaaatgcata gcaaattgcg atgcgatacc aggaaaatta 1321 ttccctgctg tgatgtaaag ccgcagtatg atatgccgaa aaggaattta atgaccacct 1381 tcgagccaca cttgtgctgg tttcagggtt aatgatgcct ggaaactatg caagg //