;ID VANDAL18 DNA ; ATH ; 11260 BP ;XX ;DE DNA transposon VANDAL18. ;XX ;AC AL161500 ;XX ;DT 06-SEP-2000 (Rel. 5.8, Created) ;DT 06-SEP-2000 (Rel. 5.8, Last updated, Version 1) ;XX ;KW DNA transposon; VANDAL superfamily; MUDR transposase; protease; ;KW TIR; VANDAL18. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; ;OC Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; ;OC Arabidopsis. ;XX ;RN [1] (bases 1 to 11260) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (September 2000) ;XX ;CC VANDAL18 is a fossil of an autonomous DNA transposon. ;CC It is flanked by a 9 bp target site duplication. ;CC Its non-autonomous derivate is NVANDAL18A. ;CC It preserves short subterminal inverted repeats. ;CC It encodes MUDR like transposase (~position 400-3600), which ;CC is most similar to the transposase encoded by VANDAL2 and VANDAL1 ;CC transposons. ;CC VANDAL18 transposase (7 exons, predicted by GENSCAN): ;CC QLTESTTFSYTWKFVDEITLKFGSSICLFGCDKCNYLIFQNGIFVLFEEQKRMDEGVMVL ;CC VGGWECKDNGEWRFKMSDNKYGKWVDLSFWFEGGDTVYTHQKMSPVSVDNESSLKKFKEK ;CC RQEKGGLNMYLSIDDVDVAEISSPEIRGHKDNNVVEVEVAGYMGGRMDDGNSTHAIPLTY ;CC EEDGFLEEIILGQSRMRAELPDTQATTLEESLDKDCPRCLDNVHGQSLQGVGIVDVEVTT ;CC IPDADAQETLDTCLVPESGEYVGPVDVVVTSLEASASEEEGQSDVEDNAAGVASDKANMN ;CC LRKGGDAIYIGWVFNNKVELHKTLTMYSMKRLFNFRIKASDKTRVIAVCDDKKCDWRVYA ;CC TFHENSEKVEIRTATLKHTCDVEARSKYGMKATRSMLGELLKTKYTHGKKGPRACELPEI ;CC VLAELPYMKAWHAAIYVGLRTVHSLAKHACCTVHLFRNVVHNFQCEGLVKMVSMAARSYT ;CC VGDLRYWFEEIQKRNIQCAKYLVEIKLSHRTLAYFPGMRYIVMRSNISESLNAAIQKAID ;CC FPVVTMVEFIRTMLMRWFCERRQTAAKTKTRCTPKIEDLLIDHLKLATDCAVIAADEWIY ;CC QVNDSFGMIFTVDLEKKTCTCRVFDVLMVPCCHALAAVGVRNVDIYSLIGDYAFVTEWRK ;CC L ;CC ;CC Another protein is encoded by the second strand, position ;CC 10975-6714. It is similar to the proteins encoded by ;CC other VANDAL-like transposon, including the SUMO-like proteases. ;CC This protein is encoded by 15 exons, predicted by GENSCAN: ;CC MSPMRSSTSKAKQKSALGGARRSVSFEDDDDPFLSAKSTAEQSSDPPIIPRIPEFNRERL ;CC PKRLYATDCYPLNGRINTYSKPKYLLYLVDILDGTKELNYICAPCFSPFFQFEVRKCSFS ;CC GKLVHQMLCRGLYTRKKHEIWFVFAGQPFRFLLREFAILSGLNCGPYPSRRDILKSQQPI ;CC NLRHPYWNVLIVRSKLSISPLLPIDDPPYPNINDYWIDEVEDPTLDYMERVIGSRYKFQQ ;CC SDWRGGCRTWPKIVVDENHPKEDNARKAKKVPPHRPSDIPDSFQAGPSAKGKGKVHEEFS ;CC TPPPRTDGHDILHGLIMEQVNSKFRELKDELKVELFGDLTENSLLKDELLDEIISNLRHG ;CC DKFPSPKSGGKSPKSTSGDGIVTPPPKAASQKDIADEGQISDPAKNLDPKIVPERQSNMP ;CC SRIADSSSKNPAPSGQTHAQLLNALQQQAWSNYGGLSEVIKNINQSHASSSGPPQAGKFG ;CC STCSDPSGGPSSSKSSSDHNPKDFQTPLQTIPEDTEAEDQDAALGDAAIGDEEMDGKSDN ;CC VNITEDHNPNDFLTPQDEAVLVSDSESGDDFDDGANQEDEGDKDPQRGDEGDDTHQGDGD ;CC PKQGDEGDDESEGSKPFVITVAIHPEELLQSSKVDTEQLSDQEKGKKKPQRFCETVTVSV ;CC VKGPHDDLHPIAKVNDEVRKSFLSTIKAYRQRKYVIEGHVVPKTFFKDMHTPQAAVHQEA ;CC WFADVDILYTPLHLTAGHCVSIVINQKEGTIGVLDPIADSKTAKQMDDLRTNEVPLEFAY ;CC DRLPEVFQTEHADDSGPLVVKFIELHFQAISHDSITEESVEDLRMRFAVDIYEEFIEALR ;CC V ;XX ;DR Positions 167349 178608 Accession No AL161500 GenBank (rel. 116.0) ;XX ;SQ Sequence 11260 BP; 3607 A; 2039 C; 2645 G; 2969 T; 0 other; VANDAL18 gagaatcttgcaaaacctgccatattcccctcaaaatcttacaatccctatcatattcacagtcagctta cagaatctaccacatttagctacacgtggaaattcgtggacgaaattacccttaaggtgggtcagtgctc tgacttagatggcgacagcttcgtccagcgaaaagaggcagcccctgttccgtaataaatgtttccgttt ccgattggatgttatgtggatttattttttaaaaatggtaatataggggttagtcactttaattgtttat taatgttgcagaggaaagatgttgtgttgaacagaacaaagtggtaaactggggaatttgggaggtgttg ttgaagacacaaccatttattgcggacgaggtaaaatttattatctggaatttctgtccttcgattcgct ttagtttggtagttctatttgtttgtttggttgtgataaatgcaactacctcatattccaaaatggtata tttgttctgtttgaagaacagaaaaggatggacgaaggagttatggtattggtcggtggctgggaatgca aagacaatggggagtggcgtttcaagatgtcggataataagtacgggaagtgggttgacgtaagcgaatg agatatgttgactgaaattgtatcaaaagttgcaacaacgtttggactagacaggaagaccaaatttcag ctgagtttttggttcgaaggaggagacactgtctacacgcatcagaaaatgtcgcctgtctctgttgaca acgaaagctcgttgaagaaattcaaagagaaaaggcaagaaaaaggaggtttgaacatgtatctatctat agacgatgtcgacgtggctgagatttcgtcccctgaaataaggggacacaaagacaataatgttgtagag gtagaagtggcgggatacatgggcgggcgaatggatgatggtaatagcacgcatgcaattccattgactt atgaggaagacggcttcctagaagaaataattgtgtgtgaagaaacttaaagaggaaggctagtttacta gagttggcctgcgcaaagcggggacgagaaaaggaagtggatgtagagttggcaactgagacaagaggat gggcatcagactcagaagacgaatcgttaagggaggtatcagattcagaggattatgattttgataatat gagggatatgattgatacagattacctgccggattgggatccttggaaggattggaggaacagcacattg acaagttttgacggttagccggggacacaaatgtgtggaacaactttgggggataagtcatctaggccca ataatatgggggacgatatactgctttgtggcgggggacaaagccgggttgaccttgtcgaagtggaagt tattgagatgaacggaatgggcgatgagagtgcaaaatgtcgattcagctggggcaaagtagaatgagag ctgaattaccggatacgcaagcgacaacattggaagaatcgttagacaaggactgtccaagatgtttgga caacgtgcatggacaaagcctgcaaggggtaggtatagtggacgttgaggttacaacaatcccagacgct gatgcacaaggtgatagtgagaatggaattgaggataatgatgaagaaaatacgagaatgtctatataat tggggcagagggcagtcccaaatatgaggacagattcaatgacagagacgttggatacgtgtttggtccc tgaatctggagaatatgtaggaccagtggacgttgtagtgacatcgttggaagcaagtgcatctgaagag gaaggacaaagtgatgtagaggttggtaatacaacagtgggggaaatgataatacagcaagggcactggc agaggacatgtcgagaagattaacagacggagagactatatttactgaattagcaggggacgagatgttg atgtgtagagatgccgttccgttcaaggacaacgcagccggggttgcttccgacaaagctaatatgaatc ttaggaagggtggcgatgcaatatatatcgggtgggtattcaacaacaaagtcgagttgcataaaacatt aactatgtactctatgaaaaggctattcaatttccgtataaaagcgtccgacaagacacgagtcattgcg gtgtgcgatgataaaaagtgtgattggagggtatatgcaacgtttcacgagaattctgaaaaggtggaaa ttcgtacggcgactctaaagcatacttgtgatgtcgaggcgcggtctaagtatgggatgaaagcaacacg atcgatgttaggtgagttgcttaagacaaaatatacgcatggtaagaagggaccaagggcctgtgaacta ccagaaatagtattggctgaactaccatacatgaaggcttggtacgcaaaagaaatagcaatgaaaaaag ctcgtggtagtgaggaagaaggttataagtttttcgcagacatgtctccacctgttgaggacaactaatc taggtacgttgtccacagtccatacggattatacggaggaagggaatattcgtttcaaatatcttttttt tttgcgtttgggcttcgattgttgggtaccagtatttgcggaaagttattgtgatagatggtgcacagac caaagggaaatacaaaagctgcttagttgctgcaagtggacaagatgaaaattaccaaatattcccatta gcgtttggtattatagacaatgaaaacatagcaggttggcagtggtttttcgaatagttgtcacagttta tccctgatgaggaagatctagttttcgtctctgacaggcatgcggccatttatgttgggcttaggacagt tcactctcttgcgaagcatgcgtgttgcacagtacatttgttcaggaacgttgtccataatttccagtgt gagggacttgtaaaaatggtctccatggcagcgagatcttacactgtgggagatttacgatattggtttg aagaaatacagaagagaaacattcaatgtgccaagtatttagtagagataaagctatctcacaggacact ggcgtacttcccgggtatgcgatacattgtgatgagaagcaatatctcggagtccctaaatgctgcaatt caaaaagccatagatttcccggtagtgaccatggtggaatttataaggacaatgttgatgcgttggtttt gcgagagacgacaaactgcagctaaaacaaagacaagatgtacgccaaaaatcgaggatttgctaataga tcatcttaaattagccacagattgtgcggtcatagcagcagacgaatggatctatcaagtaaacgacagt tttggcatgatttttactgttgaccttgagaaaaagacatgtacttgcagagtatttgatgtgctaatgg tcccgtgttgtcacgctttagcagcggtgggtgtaaggaacgtggacatatactccttgatcggagacta tgccttcgtgacagagtggcgtaaactatagcgtgaacatattctacccccgccaaaggaaaaggacaca gaggtcccgaacgatattagtctagtggttgtatatccaccaaatacaagaagaccagttgggagaccaa ggaccgttcagataccatcgaggggggagccggtaaataactaaactcttagcatagttttaagtcctcc gaatctatcataaccaaacgtgtcatctacttgtagggcaaaggatggaaaaagaagaagacaagacaat gcagcacatgtgggaaggatggccacaacagaggctgggggaaaaagtgcatcgagcgcgtgttaacgtt tttttgtagtttttgatgtttcgaaaagacgttttttggtccatataagtttttggttttggtctccaga ttttaatacagatcgggggtgtctttcgggaaggggatgtaattcagtcgaacgattgctttttgtaatg ttaacttatgatgttgactaccaactagtttattgtaattgctacatatagaacaataattattatatta gacagtggaagagtaaaaacgcagaaagatgcattaaaagtgctggaagcaaagtaaacgtgaagactga aagcgctggaagataatcacagtacccaccaatcaatacaaagaggacaggggttgcaataattgcattt cttatattctgagtatcgacgagggggatcaatcatgtaacacggccagcttatccagttcaagccaagt tagtgtggcgcaattatattgatattggacataacactcatagccacacaatcggcgttgcggcaagaga caacattgagtttaaatagattcatggcggtaatggcatcatttggtctattaaccgcaatatggtagag acccttcgtaaaaagtattttgggggacggatcgggtatataggcgatcatgtccattgcttctttgatt aacctttcaaatgaagccagcctaatgctctctaagtagcaagcaaccggattaccagcctttacacatc gtaacagaacaagtaaatgggtgaaccactggagactaattgagaatgcgcttcaatgagggccagggat gtctcccgcgaaacggatggatcaagtgctagacgcaagccagcgttgccagagacaatgaggggaccta agtgttggtaagataactttccaacaagaaggacaattgaaaccctaagatgttgaggaagcgattgcca gtttaccaaattgtgatgtttgaagtatggtttagtttggatttcacacagaaagaagaactatatatat agttgggattaaaggagaaaataaaatggatgcaattagtaggtatggacaatgaatattagatgtgaca aaaagctataaaagctacaccattaggacaaagcaaactctgcaaagtacaaaatttaattaaacggttt atagaatttagaatattagttgaggaccataaatatgaaaactaaatgaatgatgaagtgacaagacaat tagccattattaggcaaatggggacatggaaaagtaaatatatagactaaatattgaaaaatcataaaac gaaatatataaaaaacttatcaaatccgaaaaaaatggacacatactcatatggtccacatcttacagta cggttacataattagtggacaaaataatcaaagataaaacaatagttctgtggaaagaaaaagatttaat agagctctagcaatgaaattatcgctacatataagtgccaaggacgaaagcgacaatggggacaaggatc acgaggacgagaattatatgcgggggacaagaatggacttggtcgatgatggtacgaggggagcgttcga gaagaccaacttgatgctgaagagatttgatttcttgctggtagaggtctaggcgatcccacatgtacgg aggatcaatgcgttcaccattagacccggtaactacgaacttaatgtgttcatcctgttccctgacagag cacttgagcgctgcaatcttgtccaccaatgactcgtccaaccatttgacaagatgacgcccaggtcggg ccttgaaaaagatagcaaaagcaggttttatacgtgtggagatagaaatgaaaaatgggggttaatgggc atacctctctcttctcgcactggtagaactgtctgttgtcctcagaggacgaactcgcaagaaccacaat cccaccacaataacagcgacgtggaataccaagaatgggcgtcgacggttgggaagggtaaactagtcca tatgacgtcggagattctgaatgctgagaagattccgatggttgtgtataactatgaaggcccatgttac agtggctgtggataattttgaacaagttaaaaggaaagtgaataattaatggggttggaaaattgagaaa gtggacaagttatccttcaaaaggtttgaaagatttgaaggataattaatttagagagataaaagggggg ggggagaatttagagagataaaaggccggggggggggggggaagaagaacttcagtaacctaggcaccta ataatataataatgttaaaaatattaagttgatgtgatgtgacataaaggtaaaatcatagaaaagcgta agggataaagattagtagaaaaaattgtggagacagttgactgagactgttcttagtgggaagatacccc acaatagtccacgaatgtgaagtgtattgcatttgcatacttacaaagccacaacataattgttgtcccc tctaaatatataatgtccctccccatccgttgataagtgattttacctccacataaaatattttacataa agataagagttatatatggaataaaaggtagtaaaaagttaagtctccaaaaaacatacaagttcggaat aaaagtagagtcactaaatattaaaacagacataaattctaacatggacatcaaacacgaagagcttcaa taaactcctcatagatgtctacagcaaatctcatcctgagatcttcaacggactcctcagttatggagtc atggctaatggcctgaaaatgaagctcaataaacttcacaacaagcgggccactgtcatctgcatgctca gtttggaagacctcagggagacgatcataagcaaactcaaggggcacttcatttgtcctcaggtcttggg ggacaagcgactttataataagcggaatcaggacaataaaaggtttcatcaaaaccgtccatctgtttgg cagtcttcgagtcagcgatagggtctagcacacctatggtaccctctttctgatttatgacaatggaaac gcagtgaccggcagtgagatgtaaaggagtgtacaagatgtcgacatcagcgaaccaagcctatcggatg ctacggccagggacgatacctttcacatagtcccagatcttactgttccacgaccagtcagatttacttt tggccttcttataacgtggatagagctcaacaaagttaagtgcgaacgaagaatctagtataacagccat actctgtaccaactcatcgccatacctccgcgccaacaggcttagcatagcctcgatgtattggattaca taaagacaaccagttagatctgagtaaattttaacatattcccaggtttagcattgatttggtacatacc tcctggtggacagcagcctgaggagtgtgcatgtccttgaaaaatgttttagggacaacatgtccctcga taacgtacttcctgaccattcattcataataatgattaatagatacgtagaagaatattagttaccaaaa caataattcagcggaaaacttaattacctttggcgataagctttgatagtggacaaaaagcttttccgaa cctcatcgtttactttggcaattgggtgcaaatcatcatggggccctttgactactgagacagtaactgt ctcacaaaaacgctggggttttttcttgcccttctgggaggaagcatagacttagaagtatccccttctc caacctctctttttcttttaatcctagagggaaaagtctctgaaattgggacaccagcatgtgcattacc ctataagacaaagatttatgtcagatccataaaagacaacaaaagattgaaaaaacatagatttatacct cttgatcggatagttgttcagtatcaacttttgaggattgaagaagctcttctggatgtatagcaacagt aataacaaaaggtttgctaatcgcaataaaagatataataaggattaaatgaggaatacttcgttcatgg tctgatcatcttgttgatcaccggagtcagaccttccttcactctcatcatcaccctcgtccccttgttt tggatctccatccccttgatgagtatcatcaccctcgtcccctcgttggggatctttgtcccctggatta gtatcatcaccctcgtccttttatttgggatcttcgtccccttgaagagaatcatcaccctcgtcctctt ggtttgctccgtcatcaaaatcgtctccggattcagagtcactaactaagacagcctcatcttgaggcgt taggaaatcgttgggctacaagtaaaaagaaagaattaaaggtaaataagattctcaagaccaaaataat tatttataaaaaaaaacacaactatctagaaacttacgttgtgatcttcagtaatattcacattatcaga cttcccatccatttcctatttaaaaatgttatgcaaacatttacaatgttatatgataccaaaaaagaaa taaagggacaatactcacctcgtctccaatagcagcgtctccaagagcagcgtcctggtcttccgcttct gtgtcctctggtatggtctgcagcggcgtttgaaagtcttttggctaaataagaagtaagcacaattggt taaagtaaaaggaaattctaacgataagtaatagatgccaaaccattaaacttacattgtgatcactcga ggatttcgaggacgatggaccaccagaaggatccgaacaagtagaaccaaactttccagcctgcggagga ccagaggaagatgcatgagattggttgatgttcttaataacttcagacaatcccccataattagaccagg cttgctgctgcaatgcattcaagagttgagcatgagtctgtccacttggggcagggttcttgcttgacga atcagcgattcgcgagggcatattactttgtctctcagggacaatcttggggtcgaggttcttcgcgggg tcactaatttgtccctcatctgctatgtccttttgggacgcagccttagggggtggagtgacaattccat caccactagtggactttggagactttccaccagatttgggacttggaaacttgtcaccatggcgcaaatt gcttattatctcgtctaatagttcgtcctttaacaaagaattctctaagataaacataccagtaaggtcc ccaaataattcaaccttcagttcatccttcaattcacgaaatttagaattaacctgttccatgatcagac catggagaatatcatgtccatcagtcctcggtggtggagtactgaactcttcatgcaccttccctttacc tttagcagagggcccttttggggaccagatggaccagcctggaaagaatcagggatatccgatggtctgt gtggaggcaccttctttgcctttcgagcattgtcttctttaggatggttctcatcaacgacgatctttgg ccaggttcgacaaccacctctccagtcagattgttggaacttgtatcggctaccaatgaccctttccata tagtcaagcgtcgggtcttcaacttcatcgatccagtagtcgttgatatttgggtatggtggatcatcaa tgggcaacaacggagaaatactcaactacattgaagccgaaacaatttatcaactaaacaaatcatcaaa ggcaaactagtgagagactaataagaatctaataaaattaggtccacagattaccctaggaattagctct gtctccattatgttggagttgtggtaagtcttcaacggaggcaaactggtgagagacgtctcactgatag tctgcgtatcatcggggtttggaaggtatctttccaattcagggataacgttaaagacaaaaagttggaa gacaagagggaatccatgtgttgaattgttagactgattgaacttcgtgattagtcctgggagattgctg accttggatctaactttgtgagaaggaaggactctcgtccccagggatacgcctcaaaagcctccaagtc cttcaccatttcaacgacttatttagaaacttttacaggttgggaactacagatcaagatcccctcaaca ataactataacagcgagacaaagccttctccaaggttccatcctctcttctttaggcttcagcttatctg tcttcaaccatttgaatatatccttgatgaggacgactttgtgttccttacctattaggacattccagta aggatgtctcagatttatgggttgctgcgacttcaatatgtctctccgagaggggtaaggaccacaattc aaaccactaagaatggcaaactcccttaacaaaaaccggaagggctgaccggcaaaaacaaaccaaatct cgtgttttttccttgtgtagaggcctctacacaacatctggtggaccagtttcccggagaaagaacattt acggacttcaaattgaaaaaagggactaaaacaaggggcgcaaatgtagtttaactccttcgtcccatct agaatatcgacgagataaagaaggtacttaggcttagagtatgtatttatacgcccattcagcggatagc agtcagttgcgtaaagtctcttgggaagtctttcccgattgaattcagggatgcgaggaattattggcgg atcagagctctgctcagcggttgatttggcagagagaaatggatcgtcgtcgtcttcaaaggacaccgac cgcctggcaccgccaagcgctgacttctgtttcgctttgctggtggaagacctcatctgcgttggggtaa aatcaaacaattatcaaatcagttattcgatgtgataaaataattaaacacacaggaggacgaaaaaccc taaaagctgtaatgggggacatttcgattaatcggaacaaactcaatcaaccggcttaattgctaaaggt tttcgaactttctgggtaaatgaatcgcacaggagaggacgaactatctaaaatcataatgggagacaaa ctcgatttttcataacagaccagtaacaagggatttgctaaagattttccaaaaatacttcactgaataa aatatgaagacatgattgaagatagcaacatgcagaaacttgaaatgaccttaccggagacataatccga tgaaagttatcggtgaaggaaagggaaagtatgagagagatagacgaaagagagagagttaactgttgtt gtttttccgcacggtttacaatgaaaaagagataaaaggtattgtaaaaagacgcagttgttgagcgcga aaactgctcagtaaaccgtgggaacaaaatggacatttcacaaccaaatgtggtatgagttgtaatgccc gaagaaatatggcagattacataacgattgggaaaaatatggcagattttataattttcc1