;ID META1_I DNA ; ATH ; 4821 BP ;XX ;DE META1_I, an internal part of META1 copya-like ;DE nonautonomous LTR-retrotransposon - a consensus. ;XX ;AC . ;XX ;DT 30-NOV-1999 (Rel. 4.0, Created) ;DT 16-DEC-1999 (Rel. 4.0, Last updated, Version 2) ;XX ;KW nonautonomous LTR retrotransposon; putative RNASE H; ;KW METAMORPH1_LTR; METAMORPH1_I; META1_LTR; META1_I. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; ;OC Dilleniidae; Capparales; Brassicaceae. ;XX ;RN [1] (bases 1 to 4821) ;RA Kapitonov,V. and Jurka,J. ;RL Direct submission (November, 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC META1_I is an internal part of META1 LTR-retrotransposon; ;CC its LTR is deposited as META1_LTR. Presumably, META1 ;CC has been transposed just a few million years ago. ;CC META1 proviruses and solo LTRs are bordered by 5 bp-long target ;CC site duplications. ;CC The consensus sequence has been reconstructed based on 9 ;CC copies present in the GenBank 112.0 release. ;CC There is ~98% identity between the META1_I consensus sequence ;CC and META1_I copies. ;CC META1_I encodes only short protein similar to the 110-aa C-termial ;CC portion of copia-like polyproteins from plants and invertebrates. ;CC There is a very week similarity between this portion and RNASE H. ;CC The name has been changed from METAMORPH1_I to ;CC META1_I (Dec.16, 1999). ;XX ;DR [1] (Consensus) ;XX ;SQ Sequence 4821 BP; 1786 A; 633 C; 776 G; 1626 T; 0 other; META1_I cgttatcagcacgctctaaaaggtagatatagagattcttacattttttttaagaaccatgtttacttat cgactcatggttcatagtacttattttctattattgaaacaaaacaatatgagccgatcgatgattatag tatagatcggtaaaagcatgttttcaatgattcaataaagaagagaatcatgcttatcatttgtttctat aattactatcgcatgattcaatgattctacaaagaaaatcgttaaagaagagaatcatgcttgttaattg ttaatttttgtgatttactattacaatattgaatatataaattaccaattttataattatataactaatt ttgtaactattcatagcccggtggtgggtgatgcaagcatgtattaatgttttagcattccagttttgaa tagttgcatctatattcaatatcattttataaatattatattgtctaaaatccatttatgattgatatga tatcccttatttaactcctttgattaaaacgttatacatatcttatcacttttagatattgacttttcca tattaaatatttgatttccatatatttgattgtgttattattatttttactaaaaacgttgcaagataat ttttctttttataagattccatatatctaaatctttgtgttattattatctaaatctttttataagattt ccatatatttgattgtgttattattatttttactaaaaacgttgcaagataatttttctttttataagat tcttttctctaaatctttgtggtatctaaaaaaaaaaaaaaaaaaaaaaaaaaaattgttcatggttttg ccctaattttgcacgaaatcattttacccaaatcttgcacgaattcatattaccctaaataaaagttttg tcaagatatatgtaaaatccagattttgcacaaaatagttttattctgattggttttacaatattgcatt aaaattgtattagtatataatacttgattattttatgaaataaattgattgataaataacttaatttaaa ggtataatcacttatagaaattttcatgaatgactagtttaatgtatcttaagaagatatcatatttttg atggtcaaagttttttcaagaacttaaattatcaccagaagttgagaaaataaatatggtaaaaaaaaaa aaaaataaaaaaaatttctaacgatgaaataatctagtatatcaagtagtataaaatcttattaaaagac tctagaagagcatatacattgttttctatgggaatacaaaattaaaatcatcgatgcggtatagttctcc aaatctcaaagttaatatgatgagatataaaatacattatgattctagagtggaattcaatacgagatgg atgaacttgaagtttcatcatttcgaggaggagaagtaatgaatctcacatggataataagtgacatatc cagaagattatgttcaatctttgactactaaagatctaaaagttgtataaagcaattcttatacgaatgt gttattagataaaataagttataattagttattactaaaacttcaagacttgaagtctctttgtgaatat aactcacattgttaagagaatatctctgatgcggagatggtaaaacagacgcttaaacttttacgcaagt attgttgtcctgtagacacaatattttgaaagaaattttgagaactattataaacttaaatcgagtgttt ttcaaaggctaagaaaatatatgagttatcgatgataagtaatactcatattctgaagtgaatataagat cttacatagttagtcaaattaaatttaatatcgtttatactagaatataaaattttaattattatctcgt tattgttttattaacatatgattgattattaaaatacatggaagtaattttgattataagatctcattaa gggagtaactgataagcaatgaaaagtaaattagaagttttgaaagaactagaagtttcaaaagaattaa aagtttcaagagtatatttggcttaaccggattggtcatcctggtttaatgatgatgtgaaagtattgag aattatgtggacattaggtgaaaaaccagaagattctccctaatgatttatcaaatgttacttgctcaga aagcaatatgataatgtgatttttaccagtgtaagtaatttggactttatctattcgtaagtatatacaa ggagatgattatgggttgatcacccactatatgacatttagatacctaatggttataaaagatgcatcga ttcaatggacgcattgactcgattgttgcatcgacaagaaggtcatatttatccttgttataaacccgca acatagagtttgcgagattactttcttgattaaagtacaagagtatttcagtgtttatttataataacca ttattggatatccgttgggataagtgtttaacattttgaaattcatgttcatacacaaaatggtttagta acatcgatacgcatcaagccaatgaataattaatagttttccccattattattggttttgggtcagaaac caaatagttttcatctaaaagctttgaatgtgaaaagtgctccaccacagcacgcagagatgaaccctca aaggaggataagaatacatgttggatatgaatgataactaagccatcctagaaggatttatataccgctc gttttgaagactatcatattatatagtcagctattccaacataagggggagaatgtatacagctggtgaa aaagataaaaagaaatgaattatcaatgatcctcggagtaaagaatgtatattaagagtccaaaagataa ttcaattacagaatttagcgttgtaattgccagacgcatttgctgacccaaataaagtgatgaagtcact tataccagttgtaaattaaatgctccagaatataatgaatgtcctgtaaggaccaatttcaaactgctat tgagtcttaagatcgcatgaagcgtaatagaccttggttccaaatataaatatcctcgtaaaagtgaagg agcacaaaattaaaaatgaccaaattgaggaaataaatattttgatgatctcttgaagagagtgaatgat ctctaaaagagacataaacatgacaaatgaaacattcaagtacttgacaatgaagagatctagctagcta tgtcatgtcaaaatataatggaatcaaaagcaaatcgacgtcgtaatatatttgcatgctatgagcagtt gatattatggacaaaaaggaggatcatgaaagaaagtctattgaaaagtgtacacaaagtaatgattagc caaaaatggaaaagaagaaatagacatataattataatctctagtagagatatttggactagtagtctat gcacatgatgtgtaaaaccagtggaaaataaatgagtctttatgtgaaagaatagtgaaattaatgagat tttcacaaagataagaaatgtattatgaagagatatattctcttgtggtggatgtaatatttttttaagt atctaaagtctggcaataagagacggaacactggatatgacatttatatgaaattcttgaaagatataat ctctgaaggattaattatatgagaattatgttctctagaactctactcgatcgaataaaaagaaatatgt aacatgacatataatcatataaatgtatatttatgttgagtttgtcaaaatatattgatcaaactaatat ttgttttgaaaatcattaaaactcctacagagttatcataagtaatacgatgacaataatctatgataaa atatcactagataatgatatttataagtctatatgaaaaccatataattttgatcattaagattatggtt attaattccaacgagatattgtatttgattgaaaatcatctcctgaagaagatgtttccgagggggagat tgaatgatatgcgtggatgtaccctttttccttatcatagtttttatcccacatgatttttctatgacaa ggtttttaacgagacattaaagaacacgcaaataatacacttgatgaatattaagaaattctatcaatca tccaaatgaatattatacactaatgatatttagagaaataaataagatggtcaagatgaatcatctaaaa gattcatgagcagcagaagaatggcgttgtactttatccagaaatttgttcaagagaagatttggcagac ttattctcaaatactgtttattctctgccacatcttctaatcatgcagagattttaccaattcatgaagc tagccgcgagtgtgtatggctaagatccatagttcaccatatacaagaagactgtggtatgtatgcaggg aaaaagactccaacaattatgtacgaagacaatgcagcatgcatcgcacaactcaaagacggatacatca aaggcgatagaacaaagcacatcctaccaaaattcttctacacacacgatctacaaaagagcggcgatgt acgagttctacagatccgttcgaatgataatctggctgacttattcaccaaggcgctacctactgctact ttcaagaagttagtctatcgtatcggattacgccgtctcaaagatctcgacgaatatactcataaggggg agtaattgtatgttgcactctttttcccttaaccatggtttttcccattgggttttcctggtaaggtttt taatgaggcagcatttcaaatactttacgagttatgatactataatggtcatcagggggag1