;ID HELITRONY1B DNA ; ATH ; 1311 BP ;XX ;DE HELITRONY1B is a non-autonomous DNA transposon, a consensus sequence. ;XX ;AC . ;XX ;DT 19-JAN-2001 (Rel. 6.0, Created) ;DT 24-MAY-2001 (Rel. 6.2, Last updated, Version 2) ;XX ;KW Non-autonomous DNA transposon; HELITRON class; ;KW HELITRON1, ATREP5; HELITRONY1A; HELITRONY1B. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; ;OC Dilleniidae; Capparales; Brassicaceae. ;XX ;RN [1] (bases 1 to 1313) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (January 2001) ;XX ;RN [2] (bases 1 to 1311) ;RA Kapitonov,V.V. and Jurka,J. ;RL Update (May 2001) ;XX ;RN [3] ;RA Kapitonov,V.V. and Jurka,J. ;RT Rolling-circle transposons in eukaryotes. ;RL Proc Natl Acad Sci USA 98(15), 8714-8719 (2001) ;XX ;CC HELITRONY1B is a non-autonomous DNA transposon. ;CC There are several copies of HELITRONY1B in the genome; they are ;CC ~94% identical to the consensus sequence. ;CC HELITRONY1B transposes precisely in the AT target sites, without ;CC duplication of the host DNA. ;CC There is 82% identity between HELITRONY1B and HELITRONY1A. ;CC There is 81% identity between HELITRONY1B (position 133-1313) and ;CC ATREP5 (188-2388); their 30-bp 3'- and 20-bp 5'-termini are ;CC 90% and 95% identical with each other. ;CC HELITRONY1B and HELITRON1 share the 100% and 85% identical 20-bp 5'- ;CC and 33-bp 3'-termini, respectively. ;XX ;DR [2] (Consensus) ;XX ;SQ Sequence 1311 BP; 531 A; 152 C; 126 G; 501 T; 1 other; HELITRONY1B tctacatatacatttttggtagactttttggccaaaaatcccttaactatttactaataacatttaggtc cttacaaattatatctcaaccaaatattctattactaaaaatttacaatttgttagtttgcattaaatac ttaaattaactctttcctatattacatatttagtccctacaaaatctatctaaaaaaaatatgtgtctaa atttatatccttaattaaatcttatcattattgaactacattcaattaattacgaatttcctaaaatttc tctatctacattaaatataaatatatgctttttctttcacttttagttgttcttatatctaatttatttg attttatataaaatatatatagttaataaaatattagattttttctgcatatgatgtaattcaaattttt aaaaacagacatatattactcaatcgatgaagaaaaaaaagtaagtgtaaaaagtctcacattgcttaag aaattgggcaatggttcagagtcttattataaaaagaaccaaaatgattttgaataagaatgaactggaa gtttgatttatcaggcatccaaaaataaaaatgttatccggtttactctgattctctattttaaagaact gaatctttaaaaatttcaaaatattataaatatttaaaatttcttaaaagttaaatatcaaaaaatttaa aacttttaaaaagttatactttattaaaaaatattaaatatattaatacgggacaatatactacgggtga aatcctatatataacaatcaaaatacaattataaagtttggatcgatattattattattttttttaattt caataccataaatatttaaactttagaaaaaatgacaaaatgatgtttaatttcacgtgacggggttata tggtgggacgagtttgagttgatattaatacgggatggtatatactatgggtgaaatcctataattaaca atcaaaatataattatacaattttaaaaactaaaccaaagtaacaatattaatatatatatatatatata tatatatataacttaaaattttaaattttttagttctaaaattgtcccaaggtgtattatacgttaaaaa aataacatatgtctatatatcatcttaaagacaaaattcatttttttgataaaaatatacacatgtggta tacctcttaatatgttatatatatatatatatatatatatataatataatattaattagaataaaatcgt taactttctaatgawatatcaacccgcggtgtaccgcgggtcaatctctag1