;ID HELITRONY1A DNA ; ATH ; 1348 BP ;XX ;DE HELITRONY1A is a non-autonomous DNA transposon, a consensus sequence. ;XX ;AC . ;XX ;DT 19-JAN-2001 (Rel. 6.0, Created) ;DT 24-MAY-2001 (Rel. 6.2, Last updated, Version 2) ;XX ;KW Non-autonomous DNA transposon; HELITRON class; ;KW HELITRON1, ATREP5; HELITRONY1A. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; ;OC Dilleniidae; Capparales; Brassicaceae. ;XX ;RN [1] (bases 1 to 1350) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (January 2001) ;XX ;RN [2] (bases 1 to 1348) ;RA Kapitonov,V.V. and Jurka,J. ;RL Update (May 2001) ;XX ;RN [3] ;RA Kapitonov,V.V. and Jurka,J. ;RT Rolling-circle transposons in eukaryotes. ;RL Proc Natl Acad Sci USA 98(15), 8714-8719 (2001) ;XX ;CC HELITRONY1A is a non-autonomous DNA transposon. ;CC There are several copies of HELITRONY1A in the genome; they are ;CC ~94% identical to the consensus sequence. ;CC HELITRONY1A transposes precisely in the AT target sites, without ;CC duplication of the host DNA. ;CC There is 76% identity between HELITRONY1A and ATREP5 over their ;CC complete lengths (several long indels); they share ~90% identical ;CC 30-bp 5' and 3' termini. ;CC There is 70% nucleotide identity between ~160-bp 5'-terminal ;CC portions of HELITRONY1A and HELITRON1; their 20-bp 5' termini ;CC are identical); their ~150-bp 3'-termini are 70% identical ;CC with each other. ;XX ;DR [2] (Consensus) ;XX ;SQ Sequence 1348 BP; 560 A; 164 C; 129 G; 495 T; 0 other; HELITRONY1A tctacatatacatttttggtagggtttttggccaaaaatccctcacctatttactattttcaatattagt ccttacaaatttaatctcaatcaaatactttataactaaaaacttacaattagcttaattgcattaatta gttgaattaactctttcctaaatttttatccttaattaaatctttctttattgaactatattcgattaag gctaatttcctaaaatctatatatcgacattaaatataaatatataattttctgtcactatatttgtttt tatatctagttttttttactttatatataaaatacatatagttaataaaatattaaatttttttgcatct gatgaaattcaaattttttaaaacaaacatataatactccatcgatgaaaaaaataagttttaaaggtcc cacattgcttaaaaaatgaggaaatcgttaagagtcatactataaaaaagaccaaagtgattctgaatac gaatgagcaagaaccttgatttcggtttacttcggttctttattttaaataactaaaagtttaaaagttt taaaatattatatatatttaaactttattaaaagttaagtattacaattttttaaacttttttaaaagtt aaactctataaaatatatttaaatattaatgattttaaaattttatgaactttttataaatattcgaact tcataagaaaatgataaaatgatgtttaatttcacgggacgaggttatatggtgggatgagtttggatcg atattgatacgggatgatatactatggatgaaatcctaaaattaacaatcaaaatacaattatacaattt taaacactaaaaaaattaaaattttcaaaaaaaaaattagttataaaaatcatacagaggtgtatcatag tatcatacataaaaaaacaatagcatgtatctatagatcatcttaaagacaaaaatattattttttattt aataaaaatataggcctttgatgtacctcttgaatatgttatatatataaataatattaattaaaataaa aatatctaattttctaacaaaaatatcgaccccggtgtaccgcgggtcaatctctaaataatacaaattt tagatctttattatctctaaaaaacccaaaccaaaaaaacaaatactgaattttaatattaaactaacaa atatgagaacataaaacatgaattatccaagatttacatagataaaaattatgtgttaaaaatatattat ttatatagaaataataattcgtataaaaaatatctataactttttaatgaacatatccacccgcggtaca ccgcgggtcaatatctag1