;ID HARBINGER DNA ; ATH ; 5382 BP ;XX ;DE HARBINGER is an autonomous DNA transposon. ;XX ;AC AC005850 ;XX ;DT 06-MAY-1999 (Rel. 3.4, Created) ;DT 06-MAY-1999 (Rel. 3.4, Last updated, Version 1) ;XX ;KW autonomous DNA transposon; 3 bp-long target-site duplication; ;KW minisatellite; transposase; TIR; SIMPLEGUY1; HARBINGER. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; ;OC Dilleniidae; Capparales; Brassicaceae. ;XX ;RN [1] (bases 1 to 5382) ;RA Kapitonov,V. and Jurka,J. ;RL Direct submission (May 6, 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC HARBINGER is a putative autonomous DNA transposon. ;CC There are several copies of the transposon in the A.thaliana ;CC genome which are more than 90% identical to each other. ;CC They are bordered by 3 bp-long target site duplications. ;CC HARBINGER has 25 bp-long terminal inverted repeat. ;CC One of nonautonomous forms of HARBINGER was deposited recently ;CC in Repbase as SIMPLEGUY1. HARBINGER encodes two proteins: ;CC (1) position 1963-2400, its function is unknown; (2) ;CC DNA transposase, position 3282-4332. ;CC HARBINGER represents novel superfamily of DNA transposons. ;CC Transposons related to HARBINGER encode similar transposases ;CC and populate bacterial, plant and invertebrate (C.elegans) ;CC genomes. ;XX ;DR Positions 72305 77686 Accession No AC005850 GenBank (rel. 110.0) ;XX ;SQ Sequence 5382 BP; 1522 A; 854 C; 1113 G; 1893 T; 0 other; HARBINGER ggtcctgtttgtttgtccatttggatgaaccatctcaatgaagatgaaaattgttgtttgtttttcatgt ttaaatagatcatttgaatgattcagttgaatgtttttttctaaactcatccaaaaaataaaaaaaatct gactgagtttgatttgttcattctgctgaagctgattcagccaaaattataaaatgtcaataatacccta atctaatatatggaattacatccaaaaaccacatctcttcttcaccctctcctcgacacaaaacactcaa aattgagattcatagccgtcaatgatgctgattcttcgccggtgatctcgccgtcgccgattcttcactg gagactcgtcggatccatcgccggagtgtagtaggtttgtgtttctctctctctctctctctctctctcc ctctctcgcttcctctctctcgctccatgtctctctcgttgtttctctttgtatccttgttgcaatcact tgttcttgggtttgatccaccatggttacattgtttaattgtgggtttgctttactttgctttgtgttgc ttttgattcttcgattagctttagtttacggcttgtgttgctttgcttgctttgtgttgcttttgagtct tcgatttgctcttaagaggctttgttgtctctacattaggagcaacagaaccatttggtgctgccacttt agcatctgcactttagccctctttagattgaccatccatagttacaaacttcagctgcctccttgacgtg ttcaattgcatccaaagtggaattgtttttgtgtttataggtcttttgtatttttgatgcagaaagctag gatccagattgtgttatctgatttgttttgagatacaatgattgatgatgttgtgactcgtgtatagctc attgataaaaaactttgcattagtctctatttagtctcgaagaacaagtttggctctgagttttgttgat tgatgatgttgtgactcgtgtatagcttataactgcttatttatacgggagaatttcatcttataaaaga ttttttctcttcagtccttgtttcagcaagttttgtctccaagtaagaaagctttggtttctcaggtacg tcctctgtaattagtggttgcatttggctttctgtagtagtagcatgagttcgtctaaggtttgagttca aatactgtagaaatagtcaagaataatatctcatgattgttcaatatcaaatagtttttctttgctttgt tatctctaatctttgtacacgttttatttgctttgctttgttatcataagttgtgtattgtttgctttgt tatctctgatctttgttttatttgtttggtatctttgatcttgttctaacacaactacaaaacgtttgtt ttcattgtgtgctacagatgacaactatcaatggtaccgatgtgagtatattttcctctaaacttagatt tactgtaacattttctgtaatttagactgattttgtacaaaaacacatgatcaactaagaatcttgcgtg gaatgatgagcaaactcgtttctaccttgaactaagaattgaggagaagcttaaaggaaatattaggaat cagaatgtcaatgatgctgggagacagactattatagatagattttatgaggtttatgggaaagacatac atggagaaaatttgggatcaagtttactacttgtaagaagcagtatgaaggttttaagaagctgactcac aacagaaccggtcttggttactatccaaatgggagcataagaatgtctgatgattggtggaatgaacggt gtaaggtatatagattcttaaacttcttctgtcctttgtttgttctagatcaagttctcattgtttgttt attctcattgtttgttaagaatggcctggagctcggaaatttaaagataagccagtggcaaatgtggatt tgatggaaaaggtatttggtacagtgcatatcagtggagccgagggctgggctcctaaacaaggtgaaga gaaattagactcaatgcatcaagatgatgatggtgattcaacgcagatccctataactcaagatgatgat ggtgaatcaaggcagatccctctaaatctagatgatgatgaagcagcgcatatccttcctactcaaagca atgttggcaatggtccctcatattcaagtaagtcaaagagtagtaagaaaagatcaaggtctgtacaaga tgaacaaggtgtagcagaggtgattaaggatagtatcgagtcacgggataaaattctttcccacaagaac caactaatagagatgcaccctgagtttagttgctgtcagcttcgagccatgcaaattctacactcgctgc ctgctataagggtgtggtctcccttatacaaagcagcaattcaacatcttaagaaagatatcgccaatcg tcagacattcttgttttatgaagatgatgagaacaaggttctctacttggagtttgaaactggtgtaagc aggaatgcatgagaaagaagacagtgtcttgcattgttatttttaagaattcttgtatttcaatggtttt tatgaactctattgtctgttatcatcttgtgtatgagaaccaagtttttttagagaatgagaataaaatt agctgctttctattatcttgtgtatgagaaacaagttttttatcttgtatatgttctgttgctcaggtct gcttaggtcagaggagtgtgaggtgaaaagattcttgtcggtattgtaagtttatcatttccttgttatg cttctgattgtatcgttttagtatatcatctgatttgagttttttatttgtttcaggctgatttagattc ttcaaagcaatcaacttcacagtcagttatgcttcaagaggtacatttctgagatctatagcttgtacat ttctgattaatggaatctatttgatgggcatgaatgtgatcaattgattttctctccgtttccattatga tcttgttgtgctttgtactgtcactttatcttggcgtagtagttcttagggtgagttataacaattggaa aattcttcgtattcaatccgtgtatgaacaatatgtcaatgtcctgtttttcactgtcaaaattcttccg taatctgaagtgacttatatttgttctagcaattctcttgtctagtctcactcgtgttggctactttctt atgtagggatgactagtaatctgaagtgacttatacattcttgtttcatttttatgtagggatggatttg aaagagacatttagatttttagttgaggatgatgacatggatttggtactagaggaagagaacaatatgt atgctcttgtaaaggaattgtatggagggaagaatgtgaatactgaaagacagttagtgaggataaacag aggtggaggctggcgtcgtgttcagcggttgatggtcgagtccaaggtagaatgcttcgatattttacgc atgcaccagtcaacatttaggactttatgcaagattctttcagaacaatacaagttagaggagtcctgca atatctatcttgaagagagcgttgcaatgttcatagagatggttgcacaagatttaactgtacgggtcat agctgagagatatcagcattcacttgagacagtgaaaaggaagctggatgaagtattaagtgctcttttg aaactcgcagcagacatagtgaaacctacaagagatgatgtcacaggtattagtccctttctagtaaatg ataaacgctatatgccttattttatagattgcattggtgcccttgatggtacacatgtgtctgtgcgtcc tccatcaggggatgtggagcgatatagaggtaggaaatctgaagctacaatgaacattctagctgtgtgt aatttcagtatgaaattcaatattgcatatgtaggagtacccggaagagcgcatgacactaaagtactaa cctactgtgctacacacgaagcttcatttcctcacccacctgctggaaaatattacttagtagattcagg atatcctactagaagtggctacttaggtcctcaccgtaggactagataccatttagaactgtttaataga ggaggtcctccgacaaacagcagagaattgtttaatcgtagacattctagtttgagatctgtaatcgaaa gaacatttggtgtgtggaaagctaaatggagaatacttgataggaagcacccaaagtatgaagtgaagaa gtggattaagattgtgacatcaacgatggctttacataattatatacgagattcacaacaagaagatagt gattttaggcattgggaaatagttgaatcatatgagcagcatggtgatgaaaatgatgggcatgttccat atgtgcctactggtgacagagtaatggagaatatacgagattccatcactacagagatggccaaaggaac aagactcccatattaacaggttccatctctctgtcttatgttattgattgtctctgtcttatgctattgt ctgtttctgtcttggttttaaattttgtgactaatagtgacagctgaatggtcacgtcactacataagtt ggttgattacacacgttttaaattttgtgactagtagtgacagctgacaagtaattcgttgaacatagtg ttcattagtttggattagacttgattcaattgaatagcttgacataatgacagctgaatggtctatgttt ctggttttagctcattgttgaatagtctctctctcaatctagttgttgtattcttgagcagctgcaattc tagtgtctcttgatgttgtttgctttagtgttatggtttggtaatatgcataagaccatactttggtttc tgattctagtttgtgtcatgattgaattacttttgagaatgtgtcatggttgaatcgttaggtaagtact agccaatatgcatgcttgctcttattggagaattggtgatgattcaggttattgctcttctttacaggtt tagtaatttgaaattgaagtttgaaatgggaaatgatcaacgacgacaagatttgaagcacaaaaccaaa ttctctttttcaaactttactttgatttataagaatgtagcaattgacttgttacttaacagagggtatt ttagtcatttatatatatatgagaaagtgaatgattcatccaaatgatcaaacaaacaaagctctatcta aatgatgcatttagatgaattagcaaatgattagcaaatgatcaaacaaacatcattaagatgaatcatt caaatggattatttggatgaatcatttggatgcaaattccaaatgatcaaacaaatagagcc1