;ID ATREP3 DNA ; ATH ; 2097 BP ;XX ;DE Non-autonomous Helitron DNA transposon - a consensus. ;XX ;AC . ;XX ;DT 21-JAN-1999 (Rel. 3.1, Created) ;DT 24-MAY-2001 (Rel. 6.2, Last updated, Version 3) ;XX ;KW Dispersed repeat; nonautonomous DNA transposon; HELITRON class; ;KW ATREP superfamily; ATR1; ATREP3. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; seed plants; Magnoliophyta; ;OC eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (unclassified portion of ATREP3) ;RA Rounsley,S.D., Kaul,S., Lin,X., Ketchum,K.A., Crosby,M.L., ;RA Brandon,R.C., Sykes,S.M., Mason,T.M., Kerlavage,A.R., Adams,M.D., ;RA Somerville,C.R. and Venter,J.C. ;RT Arabidopsis thaliana chromosome II BAC F26C24 genomic sequence ;RL Unpublished ;XX ;RN [2] (unclassified portion of ATREP3) ;RA Parnell,L. ;RT ATR0053 repeat in CSHL AtRepBase ;RL Direct submission (October, 1997) ;XX ;RN [3] (unclassified portion of ATREP3: bases 1 to 561) ;RA Jurka,J. and Ma,J. ;RL Direct submission (January 1999) ;XX ;RN [4] (bases 1 to 2099) ;RA Kapitonov,V.V. ;RL Direct submission to Repbase Update (February 1999) ;XX ;RN [5] (bases 1 to 2099) ;RA Surzycki,S.A. and Belknap,W.R. ;RT Characterization of repetitive DNA elements in Arabidopsis ;RL J. Mol. Evol. (1999, 48, 684) ;XX ;RN [6] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;RN [7] (bases 1 to 2097) ;RA Kapitonov,V.V. ;RL Updated (May 2001) ;XX ;RN [8] ;RA Kapitonov,V.V. and Jurka,J. ;RT Rolling-circle transposons in eukaryotes. ;RL Proc Natl Acad Sci USA 98(15), 8714-8719 (2001) ;XX ;CC Individual copies of ATREP3 are ~97% identical to the ATREP3 ;CC consensus sequence. There are several minor ATREP3 subfamilies ;CC determined by multiple diagnostic positions in multiple alignment; ;CC multiple copies of ATREP3 have internal deletions typical for ;CC DNA transposons. ;CC ATREP3 shares common structural features with other ATREPn ;CC elements and HELITRONs; all these elements have conservative ;CC termini: 5'-TC and CTAG-3', and they have been inserted in the AT ;CC target sites, precisely between the 5'-A and T-3', without ;CC duplications or deletions of genomic DNA. ;XX ;DR [4] (Consensus) ;XX ;SQ Sequence 2097 BP; 869 A; 234 C; 225 G; 769 T; 0 other; ATREP3 tcctactatattatttgggaagtacattttaaatgtaaccttaatttttgtaagtaattacataggtatg ccattagaaataaaattttaaagagtaaattaatttatctctttaaggattaaaaagtcaaatactaatt taattaattaaatttaattaaaaaacgaaatacattattaatttccaaaaataataaccaatcaaaatca acatataagatttgatatctaaattttaattaatttaatttaattagaaaaacgaaatacattattaatt tccaaaaaagtaaccaattaaaatcaacaaattagatttgatatctaaattatcatattaattttttatt aattattatagttcacttctcatctttatatgattctatttttgcgaaaaaataatatcatcattataaa aaaataattagagttttttcgcatatgccataatttgaatttttaaaaacgaatataaactgttcaatac atgaaaaaatattataacgggtgaaaaatagatttaagaaaactttctactgagtaacgggtcataattt gaaatatttatattcaatttcatacatattatattgaaaatttataatcttatatactacaataattaat aacatattagatttttttatgtgtatgatgtgattcaatttttaatacaagctggaaaatcctagaattg acgggtttagatcgatattaatacaagatggtatactacaggtgaaactcttaaattaacaatcaaacta caagtgtataatcttaaacactaaacaatatagataatatcaacaaaacatatacaactcacagtttact atacatttaaaatcaaataaaataatatcatatatttttaaatcatctttacaataaaagtttttagttt aactaaaatataagcctacctgcggtatactgcaggttaatatctagattatagggcttattggatctaa agacgggtcatcaaagatttcctaaactgaagcaaaatatactgaatattcaaatatctatctgttacca aattataaacaaataagttcgtaaaacaatttaatattttatatacgaaatcaattaaatcttaatcaca taaaaattagcacaaaaaaaagtattcaacaattaaaaaattatcaaatctctgtgttatataagttttg atactatattcgaataaagtgtaatataccttttcaatttgtattctttaactaatttaagctaactaat atatttgctaatcttatacctatcaaaaccgactatcgtttcttatctctatagtatttttgcaagactt ttttggtggatttggataaaagtgcattcgggtcatatggtacattcccctattaaataaatatggtgca ctcctatgttattagctaaaatgtttagattataattcagagtcatatcattaataaaattaatattaat aaaataaatggctttttggcaagacggatttggagggacgggtttttgaatcaacattaataaaaaagta aaatataattaatccaccgtttcaatacgggttaaatctttaatttattattttttaagaccactaatat taaacatatcaaatcatcctaatttagaaaagattatataaaaccaaaaatgttatgtggtatgtataat gttactatatataaaattaaactataaaatataaatgtattagagaatgatacaatttgcaaaactttta tatataaaaaataattcttaaattttaaaaattactactttaaaaaaaaaatcacgggacgggtaaagaa attacagaacgggttttattttggaattgggttatatggtggatgtatttgaatcaatatttataaaatt ttaaaatattattaatatgctgttttaataggggttaaaacttcagttttttaacaattgtctcatggat tcgtggtatagcgttacttaataacaattataaactgtaaaatataaatattttataaaaataaaatttg caagttttaatatatattacttttaaaaaataaatcgtcccgcggtataccgcgggttaaaatctag1