;ID ATREP1 DNA ; ATH ; 888 BP ;XX ;DE ATREP1 is a non-autonomous Helitron DNA transposons - a consensus. ;XX ;AC . ;XX ;DT 16-FEB-1999 (Rel. 3.1, Created) ;DT 24-MAY-2001 (Rel. 6.2, Last updated, Version 3) ;XX ;KW Non-autonomous DNA transposon; HELITRON class; ;KW ATREP superfamily; ATREP1. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; ;OC Dilleniidae; Capparales; Brassicaceae. ;XX ;RN [1] (bases 700 to 1) ;RA Kaplan,N., Johnson,D., Schutz,K., Gnoj,L., Hoffman,J., Till,S., ;RA de la Bastide,M., Granat,S., Hameed,A., Gottesman,T., Hasegawa,A., ;RA Shohdy,N., Parnell,L., Dedhia,N., Johnson,A.F., Lodhi,M., ;RA Martienssen,R., Chen,E.Y., Wilson,R. and McCombie,W.R. ;RL Direct submission to GenBank; AC002330 (1997) ;XX ;RN [2] (bases 890 to 1) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (February 1999) ;XX ;RN [3] (bases 1 to 890) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (May 1999) ;XX ;RN [4] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;RN [5] (bases 1 to 888) ;RA Kapitonov,V.V. and Jurka,J. ;RL Update (May 2001) ;XX ;RN [6] ;RA Kapitonov,V.V. and Jurka,J. ;RT Rolling-circle transposons in eukaryotes. ;RL Proc Natl Acad Sci USA 98(15), 8714-8719 (2001) ;XX ;CC ATREP1 copies are ~94% identical to the consensus sequence. ;CC Multiple diagnostic positions indicate the existence of several ATREP1 ;CC subfamilies. ATREP1 copies are inserted precisely in the AT target ;CC sites. ATREP1 and ATREP2 share almost identical terminal portions ;CC (236 bp-long 3'-terminus and 70 bp-long 5'-terminus) whereas ;CC there is no significant similarity between their AT-rich ;CC internal portions. ;XX ;DR [5] (Consensus) ;XX ;SQ Sequence 888 BP; 349 A; 110 C; 89 G; 338 T; 2 other; ATREP1 tctatatatacatttttgcagccattttagcaaataaatcctagagttggacttatttacaacccaatgc cattagcattaaatcttttttccaaaataattaattttactttaaattcttaatttaaattgtcaatcac attatcaatcaaatttaatccaaacaaacttcacatcaatcccttaaaattagcataaacgtattttgtt aacaatattttaaaacaaagttttttgtttaaataaatattattcttactaaacgttttttgtttaaata aataaatcatgtatttgaacttatttacaatgtcatgctactgacattaattatttaggaatgaaaatat ttaattaaagatttaaatcttctaaatccttgcttttagagttattatgtcattacctaaaaggcaaaaa atattaattttttaaatattattatttatatatttaaactttataaaacattattaatatttaaacttat aaaaagtttaatatatcaaaaatttttaacatcattatataatatatagagtttaaaaaaatctcaawtt taawtccgtcatattttgtgattcgaaattttaaaaatgaacatatattaaccaattggcgaaaaatgtg tgggttcaacgtcccgcatcgactaaaatatttagacaatgattcataaacatatcataaataagatcaa cattaataaaataaatggttttttttcgggacgggtttggcgggacgggtttggcaggacgttacttaat aacaattgtaaactataaaataaaaatattttatagatagatacaatttgcaaatttttatatatactaa ctttaaaaaataaattgtctccgcggtgtaccgcgggttaaaatctag1