;ID ATMU9 DNA ; ATH ; 4693 BP ;XX ;DE A molecular fossil of the ATMU9 autonomous DNA transposon. ;XX ;AC AC005693 ;XX ;DT 27-DEC-2001 (Rel. 6.3, Created) ;DT 27-DEC-2001 (Rel. 6.3, Last updated, Version 1) ;XX ;KW autonomous DNA transposon; MUDR superfamily; TIR; ;KW transposase; DNA binding protein; ATMU9. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; ;OC Dilleniidae; Capparales; Brassicaceae. ;XX ;RN [1] (bases 1 to 4693) ;RA Kapitonov,V. and Jurka,J. ;RT The ATMU9 family of MuDR-like transposons. ;RL Repbase Reports 1:(4) p. 18 (2001) ;XX ;CC ATMU9 is a fossil of a relatively ancient autonomous DNA transposon ;CC that belongs to the MuDR superfamily. ;CC There are only two copies of ATMU9 in the genome (chromosomes 2 ;CC and 3; they are 87% identical to each other. ;CC ATMU9 is flanked by 90% identical ~240-bp TIRs. ;CC ATMU9 represents one of tens MuDR-like families present ;CC today in the A. thaliana genome. ;CC It is flanked by a 10-bp target site duplication. ;CC Exons that encode the ATMU9 transposase (~ positions 780-3600) are ;CC damaged by several mutations accumulated in the ATMU9 copy since ;CC its insertion into the genome. A short ~150-aa protein is encoded ;CC by the second strand (positions 4350-3819). The protein is conserved ;CC in different ATMU families; we classify it as a DNA-binding protein. ;XX ;DR Positions 24232 19540 Accession No AC005693 GenBank (rel. 124.0) ;XX ;SQ Sequence 4693 BP; 1525 A; 825 C; 1084 G; 1259 T; 0 other; ATMU9 gggaaaaatggcagaaaaatcaccaactttcaaaaatgagacgaaaaaattgccaactcacgagacgtcg ttttaatcacatacttttggttgatctctccaaaaaataccaaagttttgttgaccgagccaaattagtc atcgcgttaagtctttgttagtacgcgagaaacggggttaatacttcgttaacgggcatcgttgaaccta aacgacatcgttttgtcaaaaacaaaacgagccaaaaacgagagaaacgtcgtcgcttgattcacagtct gctaaaatttcccaaatcgattagaaaccaatccctaaccctaaaagagaaaattctcaaattctctcaa tctcttagcaattgatcccgatggcgaagacgcggggaggaaactggaatcctcgtcggtcgcggaggct aatggctgttgttggcgaagctaacagagcaaatatttcgaatcgaccactagaagtttttgagatctct gatgaactggagacaaattaaaacccaaaagaaaccgcgacaaatcagatcccagaagaaaccgcgacga atagaaacccagaattaacggagactaatcaaaaccaagaagaaatggagataaatgaaacccgtgaaga aacagtgactaatcgaactccagaagaaacagtgattgaggcggtgtcgattctacaagaggaaaaccca gttcctcaacagaaacaacatgaacaaaaagagaagaagaaaaaaaaggaagagtcgtgacgaagaagaa gaagaagatcgcgattgtgtgagtggagatgattgtgaggttatcggcgatgaagactgcgaggaagaag acaatgtgggtgaagtggggattgaagctgttcctgaacgttactgtgaaccttatgttgaagacaatgg ccgtggaatcgttgatgaagacaatgtgggtgttactatagatgaagacaatatgggtggaacatgtggt gaagacaatgtgggtgggaatgttggtgatgacaatgtgggtgggattgttggtgaagacaatgtgggtg gcagtgttggtgaagacgatatggatggaggtctagaggaggaacattgcgatgattttgaagcagggtt tggtattggtgcaagagaatatggcgatgcaagggacactgatgttgacagtggagaagagatatgggac gatgagaggattccagagcctttggctgacagtgatgatgaactaggtcctgaagaagaaggtgttgctg ctcctgaagccgaagatcttgaagtgcttctgagattggggaaaacgttcaatggtcctgaagaattcaa gatagctgtcttaaggtactctctgaagactagatatgatatcaagctgtataaatcacaaagtctgaga attggtgcaaagcgctcttctactgacgtgaagtgtccatggagatgctacagcatgtatgacaagaaga ctcataagatgcaactgatgatatacgatgataagcatgtatgtgtgaggtcaggttacagcaagatggt gaagtaagggacaattgcatggttgtatagggagaggctgaggaagaatccaaaaattactaagcaagag atggttagtattcatagggagtataatcttgtagtcacagaagattaatgttcaaaggcgaagacaaaga tcttgatggaaaggaaagctactcacgatgaccattttgctcggatttgggactaccaagcagagatttt ttgatcaaatcctgagaccaaatttgagattgagacaactccaggaacaaccatagacagcttaccaagg tttttgcgactctctatctgttttaaatcgcaaagagactcttggaagaacacatgtaggcctataataa ggatagatagtgcattccttaaatgggatgtaaaaggacatctacgagctactacaggaagagatggaga taataggatagttcccatagcatgggctgtaattgaaattgagaatgatgataactgggactggtttctt aagatgctctcttcttctttagggttaggagatgggagtaatgtagctgtcatatcagacaagcaattgg tgagaatctcttggtttaatacttatatggatgtttgttttgatgttttagttgtttgacattcttattt gtatcatgcattttcagggtttggtaaaagctattcatactgttatcccgcaagctgaacataagtaatg tgctaggcacattatggacaactggaaaaggaatagtcatgacatggagttacatcgactattctagaag attgttaggagttacactgaaggataattcactaaccatatggttgaactgaagaattacaatccaagcg cttatgagtctctgttgaagaccaatccgaggacatggtcacgagcttacgtcaggataggaagttgcta caatgacaacctcaataatcttagtgaatctttcaacagaactatcagacaagcaagaaggaagcctcta cttgatatgttggaagatattaggcggcaatgtatggtgcagaatcaaaagaggtatgtaatagtagaga gactgaagagtcaattcaccaaaagagctcatgctaagataaagaagatgattgctcgtgcacaaggttg tgaaagatggatggccagacataacaagtatcagatcaaatgtggcgatatggacttcacagtcgaatga acagccacacttgcggttgcataaagtggcagatgactagaattccatgtattcacgctgcctcggttat tatagagaatcgtgagaaggtggaagattatgttgtggattggtacacaactagaatgtggcagctgaca tactatgatggcattacgcctgtacagggcaagcttctatggcctagagtgaaccggttgggagtgctgc cacctccttgcataagaggtaatccaggtagaccaaacaatcatgcaaggaggaagtctcagtttgaaac agcttctagctccaataccatgttatcacgaatacatcgagtcatgacctgttctaattgccagcaagaa ggacacaacaaacaagggtgtaagaatgagattgttgcacctccaccaaaaagatctaggggtcgatcaa gaaaagatcaggtttatttcatgtcatctttaaaattatcatgtgcataaggtggttgattaatgagatt atgttgtggctgcaggagccgaggaatatattgttcggtcaaggacaaccattgcaacgagaaccatctg aaccttcccaaggagcacctacaccatctcaaacatctcttggagcaacatcacaagtagaaccatctca agcttctcagggagcaacctctcaacctccatatgtagcgccatcccaagctttccaaccatcacagaga ggacgatcaaacagaggtagatcacaaagagttggaacacagagaggaagaggaaatgcacagagcggat gggagagaggtggaacacatagaggaagtggaaatgacaacctcggaggatggagatcatggtttgaatg ttcccgctaaacaatgtgttgatgcagcttttgttttttgttttctttttttcttgtttcagaaccaaat aactcatcatgttttgttttgtcatgtttggtattatgacattgctaatttgtttcagagtgtattaaga catgtttcaatgttgcattttcataacttttgagttcaaattaccttacaaacgattagttataatccat acaacattacaaaagttacataagattgcatacactcaataaccaattgaaagtttcttttggttccctt gaccaaacataacataagcaaccacaattgtgattacacaaagcaacagaaaacacacatacaaccactc tttacacttgacgagttcctttttcctcgctatggcttcttctttcagctcttgtatctgattaagcatc tcatttgtttctgctttaactttgctaatctcatttgctacgatggctagtcttggtaaagcatcttcga cttcttcaaacacgggatcctctacccacttaaacaaatgaccctaatgcacaaacacatagatacattg ttagcttgtcaaaaaaatgtcgactcatttctatcctctacatacatctcttttggttgtccaagtattc acatctctattcctaacacaacgaaagaatggacgtccttggttctcttgggtttttgaaacaaagatcg tgacttctgatccacacaaacacttcgacggcacaccacgctctccggcaacaccacgctctctggcaac acgtgatgtgacagagcttgagctcattgttagagtgagaatgtaaaagaaaaagaagagatttggaaaa tttagggtttgagattctaaaattgaattgggggtttcagaggcttgttttgtttttaaagagacgaagt cgtttaggtttaacggtgaccgttaacgaagtattaaccccgtttctcgtgtactaacagagacttaacg cgataacttatttgtctcggtcaacaaaactttggtattttttggagaggttaaccaaaagtatgtgatt aaaacaacgtctcgtgagttgacgagtttttcgtctcttttttgaaagttgacgatttttctgatatttt tcc1