;ID ATMU7 DNA ; ATH ; 3134 BP ;XX ;DE ATMU7, autonomous DNA transposon - a partial consensus sequence. ;XX ;AC . ;XX ;DT 01-FEB-2001 (Rel. 6.1, Created) ;DT 01-FEB-2001 (Rel. 6.1, Last updated, Version 1) ;XX ;KW autonomous DNA transposon; MUDR superfamily; TIR; ;KW transposase; DNA-binding protein; ATMU7. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; ;OC Dilleniidae; Capparales; Brassicaceae. ;XX ;RN [1] (bases 1 to 3134) ;RA Kapitonov,V. and Jurka,J. ;RL Direct submission (January 2001) ;XX ;CC ATMU7 is an autonomous DNA transposon from MUDR superfamily. ;CC Its copies are flanked by 10-bp target site duplications. ;CC There are 2 copies of ATMU7 in the genome, they are 98% ;CC identical to each other. ATMU7 was active recently. ;CC However, both copies have lost some portions of the ;CC transposase and DNA-binding protein. ;CC ATMU7 has ~320-bp terminal inverted repeats, 92% identical ;CC with each other. ATMU7 encodes two proteins, ATMU7p1 and ;CC ATMU7p2. ;CC ATMU7p1 is a truncated 357-aa transposase encoded by 3 exons ;CC (358-843, 899-1267 and 1530-1748). ;CC ATMU7p1: ;CC MRKKLPADVDPPPPVVEPPHVVVEPPSASIEPPSASIEPPSVAIEPPSVAELRRASVEAP ;CC AIHEPSTRPSHSVVDNRRRKKSKQNGNRLDGDNRRKKSKSKQNGNESDGEGLSENDCNVT ;CC GDDDFDEVHYADEEDGNRLGVTEENCEDFEAHSGPAARDDGDGLVKAIHNRIPAAEHRQC ;CC AKHIMDNWKRNSHDMELQRLFWKIARSYTIGEYTANLEELKTYNPGAAASLMNTKPMEWS ;CC RAFFRIGSCCNDNLNNLSESFNRTIRQARRKPLLDMLEDIRSQCMKVEDYVSDWYTTRMW ;CC QLTYNDGIAPVQGQLLWPRVNRLGVLPPPWRRGTPGRPSNYARRKGRRSWFECSNLT ;CC ATMU7p2 is a truncated 143-aa DNA-binding protein encoded by ;CC the second strand (exons 2786-2575 and 2482-2264): ;CC XLKSISKIGSSYAMSSSSASSGVVQNRGFPVKCWCGDDVTIFTSKSVDNPGRPFFRCETK ;CC RDPKTWTNKRDSHLFKWVEDAVYEEVEDVLPKFVIIANELNKAKSEANELNVMIHELKEE ;CC AMLSKQEICKWKVCLKICFFGFV ;CC ATMU7 is only ~65% identical with ATMU3-ATMU6. ;CC The ATMU7 segment (2107-2750) that encodes ATMU7p2 is most ;CC close (81% identity) to the one present in VANDAL7 (6516-7144). ;XX ;DR [1] (Consensus) ;XX ;SQ Sequence 3134 BP; 1009 A; 607 C; 616 G; 902 T; 0 other; ATMU7 gggaaaaatgtcattaaaatcccgaactttgctaaaacattgatttaaatcccaaactttagttaaacga aaaaaacatcgaacttttgttgtcttttctaataaatcttaaacttgtgttgaccgcgccattttagtct tgccgttatctgggttaacagacttaattgacagggttaattaggcgttaacagagacttaatttgcaaa cgacacagtttcgtttttagtaaacgacgtcgttttatcaaaaagactgaacttccccaattcgatttga aaaatcacgagccttaaaaaacaaaaattctcaattctcttttgtcgatcgaggaaggaaaattcgaaac tgtaatgatgagaaagaagctgcctgctgatgtcgacccgcctcctcctgttgttgagccgcctcatgtt gttgtcgagcctccgtctgcttctatcgagcctccgtctgcttccatagagcctccgtctgttgctatcg agcctccgtctgttgctgagctacgacgtgcttctgtcgaggctcctgctattcacgagccttctactag gccgtctcattctgtcgttgacaataggagaagaaaaaaatcgaaacagaatggtaacaggttagatggt gacaatagaaggaaaaaatcgaaatccaaacaaaatggtaacgaatcagatggtgagggcttgagtgaaa atgactgtaatgttaccggtgatgatgatttcgatgaagttcactatgctgacgaagaagatggtaatcg gttaggtgttactgaagaaaattgtgaagactttgaagcacactctggaccagcagctagagatgatgga gatgtgagtgatgcggacagtggagacgatatttaacttatgtccaattactttgcagggtttagttaaa gctatacacaaccggattccagcagctgaacatcgtcaatgtgctaagcacataatggacaactggaaga gaaacagtcacgacatggaactccagcgtctgttctggaagattgcaaggagctacaccattggagaata tacagctaatctggaggaattaaagacttacaatccaggtgcagctgcttctctaatgaacactaaacca atggaatggtctagagcatttttcagaattggaagctgctgcaatgataacttgaataatctcagtgaat ccttcaaccggacaatccgacaagcaagaagaaaacctctactggatatgttggaggatataaggtctca gtgtatggtacgcaatgagaagaggtacattattgctggaaggtggaaaagcagattcacaaagagggca catgaggagatagagaagatgattgcggggtctcaattttgtgaaagaagcatggcaaggcataataagc atgagatatcacattttggtagaaaatattctgtggatatgaatgacaatacatgtggttgcaggaagtg gcaaatgacaggtataccttgtgttcatgcagcctctgttataattgggaaaaaaacagaaagtagaaga ctatgtgagtgactggtacacgacgaggatgtggcagctaacttacaatgatggtattgcgccggtccaa gggcagttgttgtggcctagagtgaataggttaggtgtcttgccaccaccatggagaagaggtactcctg gaagaccaagcaattatgctagaagaaaaggaaggagatcatggtttgagtgttcaaacttgacatgaga acatcgattggtctttggttgttggtatttggattgtttcataacttgagatgtctcttttgttgtctct tttgttgtttgatttttggttcggcaagttttaagacatgttggttaactacttttatatgaaacgacct cttcctcaacaaaattatctcgcctgcaccgtatcactcatagttttaagacaagtttttgtttgagtga aattattccatctctttactccgattctcatatcaagaccaaacactcacaccgaccaaacactcacacc ttatatcaagaccaaacactcacattcacccaagaaaaataaagaccaaacactcacaagttttattaag acagcaacaaagccaacattacaaagtcataaaagtcacaaatactacattgtcattacaagcttggcga agacaacaagataaatagacttacactattaagcaacaccaaattcatttctttttgccttaccaagcat catgtaaagaatgaaaatgctgatcaaacaaagccaaaaaaacatattttcaaacacactttccacttgc agatttcttgtttactcaacattgcttcttcttttagttcatgtatcatcacatttagctcatttgcctc ggatttggctttgttaagctcatttgcaatgatcacaaattttggtaaaacatcttcaacctcttcgtat acagcatcctcaacccatttaaacaaatgactctgttacacaatcaaaccaaatccgatatgattagctg ctaagttacataacataaacacaaactcaaactcaaactcaaactcaaacttacatctcttttgtttgtc cacgtctttggatctcttttcgtttcacaacgaaaaaaaggtctgcccggattatcaacactcttcgatg tgaagattgtcacatcatctccacaccaacacttcaccggaaaaccacggttttggacaacacccgatga cgctgaacttgaactcattgcgtaggaagatccaattttcgaaatcgatttcaattctgtcgtagaagaa gagaactgagaaattttgtttttttagggcttgtgatttcttcgatttctgatcgaattgggggaaaaca tagcaagtcgttttgaaaaaacgacgtcgtttactaaaaacgaaactgtgtcgtttgcaaattatgtctc tgttaacgcctaattaaccctgtcaattaagtctgttaacccagataacggcaagactaaaatggcgcgg tcaacacaagtttaagatttattagaaaagtcaacaaaagttcgatgtttttttcgtttcatctaaaatt cgggatttaaatcaacgttttagcaaaattcgggattttaatgaaatttttccc1