;ID ATMU11 DNA ; ATH ; 3831 BP ;XX ;DE A molecular fossil of the ATMU11 autonomous DNA transposon. ;XX ;AC AC021666 ;XX ;DT 27-DEC-2001 (Rel. 6.3, Created) ;DT 27-DEC-2001 (Rel. 6.3, Last updated, Version 1) ;XX ;KW autonomous DNA transposon; MUDR superfamily; TIR; ;KW transposase; ATMU11. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; ;OC Dilleniidae; Capparales; Brassicaceae. ;XX ;RN [1] (bases 1 to 3831) ;RA Kapitonov,V. and Jurka,J. ;RT The ATMU11 family of MuDR-like transposons. ;RL Repbase Reports 1:(4) p. 17 (2001) ;XX ;CC ATMU11 is a fossil of an autonomous DNA transposon from the MuDR ;CC superfamily. ;CC ATMU11 is flanked by 90% identical ~240-bp TIRs. ;CC ATMU11 represents one of tens MuDR-like families present ;CC today in the A. thaliana genome. ;CC It is flanked by a 10-bp target site duplication. ;CC ATMU11 has preserved well the MuDr-like ATMU11p transposase. ;CC Presumably it was encoded originally by 4 exons. Exon 3 is ;CC currently damaged by a false stop codon at position 1848-1850. ;CC The stop codon is masked by X in the 743-aa ATMU11p protein ;CC sequence. ;CC CDS join (371..1237,1363..1590,1674..2648,2728..2889) ;CC ATMU11p: ;CC MTRRESKRKRPDEKEKRDVDPVREKNTESEAVSGDDCEVCGDEDCDDIRYDDEEDDRDEV ;CC NETEHRNRLGVDEQVCEDFVAEFGEAARDDEDVSDADSGDEIWDDERIPDPLSDSDNDED ;CC LVDGVARTEPEDLEELLKLGKTFSCPEDFKIAVLRYSLKTRYDIKLYRSQTLKIGAKCLD ;CC TDVKCQWRCYCSYDRKKHKMQIKVYESKHICVRSGYFKMLKRRTIAWLFSDRLRKNPKIT ;CC KHEMVDEIKREYNLVVSDEQCSKAKTKIMKERRAVHEDHFSRIWDYQAETCRPIIGVDGA ;CC FLNWDVKGHLLAATGRDGDNRLVPIAWAVVEIENDDNWDWFIRMLTTTLDLQDGSNVAII ;CC SDKQAGLVKAIHSILPNVEHRQCARHIMDNWKRNSHDMELQRMFWKIARSYTEGEYAANM ;CC EALXKYNPGAFSSLLRTHPMTWSRAFFRIGSCCNDNLNNLSESFKRTIRQARKKPLLDLL ;CC EDIRRQCMVRNEKRYVLAGRLKTRFTKRAHFEIEKMVEGSQFCIRWMARNNKHEISLNNV ;CC IYSVDMNDNTCGCRKWQMTGIPCVHAASVIIGKKQKVEDYVVDWYTTQRWQQTYKDGIAP ;CC VQGKILWPRVNRFGVLPPPWRRGNPGRPNNYARRKGRNEAASSSITTLSRLHRVMTCSNC ;CC KQEGHNKKGCKNQWVEGQPKRPRGRPKKASEPRNILFGQGLSHAFSGSQDQASQRSQSSQ ;CC TSHVSQRVPHGEGQGQGQGQYTY ;XX ;DR Positions 53477 57307 Accession No AC021666 GenBank (rel. 124.0) ;XX ;SQ Sequence 3831 BP; 1311 A; 585 C; 819 G; 1116 T; 0 other; ATMU11 gggaaaaatgccttataaatcctcaactttttcattccgttgaatttaatccccaactcgaactaaaacg ttttaaatactgaactttagtttgactttcaaattaaataataaactttaattgacgaagttgttttaag cacgacgttaattgtataacggaacaattaaacagagttatatttctgttaataggtactgttaaacctt aatgaggtcatttccttcacattaaaacgacgtagtgtgctgcaaataataaaaaccccattatcgattt gattatccccaactaaagaaaacaccaaattgaaatcaaatccctaaccatataaatcgaaagctttctc tgaacattagattcgttgtaatgacgcgacgggaatccaaacgaaagaggccagacgaaaaagaaaaaag agatgttgacccagttcgtgagaaaaacactgaaagtgaggctgtgagtggagacgactgtgaagtgtgt ggcgatgaagattgtgatgatattaggtatgatgatgaggaagacgaccgcgatgaagttaacgaaacag aacatcgaaatcgtttaggagtagacgaacaagtttgcgaagactttgtagcagaatttggagaggcagc gagggatgatgaagatgtgagtgatgcagatagtggagatgaaatatgggatgacgagcggattccagat ccattgtctgatagtgataacgatgaagatcttgttgatggtgttgctcgtactgaacccgaagatcttg aagagttgttaaagttggggaagacttttagttgcccagaagatttcaagattgcagttctaaggtattc actaaaaactagatatgatataaagctctataggtctcagactctgaaaattggtgcaaaatgcttagat accgatgtcaaatgtcaatggcgatgttattgctcttacgataggaagaaacacaagatgcaaattaagg tttacgagagtaagcatatttgtgtccgatcgggttacttcaagatgttaaagagaagaaccattgcttg gttattttcggataggctgaggaagaatccaaagattaccaaacatgagatggttgatgagataaagaga gagtacaatcttgttgtaagtgatgaacaatgttcaaaggcaaagaccaaaatcatgaaagaaagacgag ctgttcatgaagatcatttctcaagaatatgggattatcaagcggaggtgttgcgaacaaatccaggact aagtttgagatagagactattccaggacaaaccattggaagcttacaaaggttttatcgtctctttattt gttttaattcacaaagagattcttggaaacagacttgcaggcctatcataggagtagatggtgcttttct taactgggatgtcaaaggacatctcttagctgcaacagggagagatggagacaataggttagttcccatt gcttgggcagtagttgaaatagagaacgatgataattgggattggtttattagaatgctcactacaactt tagatcttcaagatggaagcaatgtggcaatcatttctgacaaacaggcggttagtatattcacaattct gacacattctgtttttttttttcttttctaaatattgatgatatagtccgatgtttctttcagggtttag ttaaagctattcatagcattcttccaaatgttgaacatcgccagtgtgctaggcatattatggataactg gaaaagaaacagtcatgacatggagttacaacgtatgttctggaagattgcaaggagctacacagaagga gagtatgctgctaatatggaagcattgtggaaatataatccaggtgcatttagttcccttctaagaactc atcctatgacatggtctagagcattctttaggattggcagctgttgcaatgataatttgaataatttgag tgaatcttttaaaagaacaatcagacaggctaggaagaaacctttattagacttgttagaggatattagg aggcagtgtatggttcgaaatgagaagaggtatgttctagctgggaggttgaagactagatttacaaaga gagcacattttgagatagaaaagatggttgaagggtcacagttttgcatcagatggatggccaggaacaa caaacatgagataagcttgaataatgtaatttactcagttgatatgaatgacaatacatgtggttgtagg aaatggcaaatgacaggtataccatgtgttcatgcggcatctgtcattataggaaagaaacaaaaagtag aagactatgttgttgactggtacacgacacaacggtggcagcaaacatacaaagatggtattgcacctgt acaagggaagattctatggcctagagtgaataggtttggagttttaccaccaccatggagaagaggaaac ccagggagaccaaacaactatgctaggaggaaaggaagaaatgaagctgcctcgtcttctatcaccacgt tgtcacgcttacaccgagtgatgacgtgttcaaactgcaagcaagaaggccacaacaagaaaggttgtaa gaaccagtgggttgagggtcaaccaaaaagaccaaggggtcgaccaaagaaagcttcggttagtctttca taacattttcatcattttacttctggtatgtatatatattgatattggtatatgatcttaaaaccaggaa ccaaggaatattttgtttggtcaaggattatcacacgcattttcaggatcacaagaccaagcatctcaac gatcacaatcatctcaaacatcacatgtttcacaaagagttccacatggagaaggacaagggcaaggaca aggacaatatacatactaacaataatgatgtgttttttttttgtagtttggttggatcatgtttttgaac ctcatgatttgtttctgttttctttattttggtcggattattacagcttgtttcagaacctgcagcttct tttggcttgtttcaataaatgtttcaaaaaatttggttttattaactcattaccatatccttacacaaga atttcattattacaactttcattccttcatctcgaaattcttacccaagaaataaaaataatcaagcggc aatggtgataaaacaaagccacacaaagcacaagttcaagccgcacaaaacaatgacaatggtgatatag catcctgtcatatccaaataggccattatttgaatgtgaattttgggtttctctcataaacattacatac agtttcgatttcatctagtgattccattctctttggatagtagaatgacgatagctttgcacatgttgat gaaatcagtttaattgtaggatcattcacatacattttgacgacacacgttttccgacgaatttcaatgt tacaaaacttgaactcaattagaaaaggaagaagaacaatacgagagaatcaaaaattaaaccgagaaaa atgagggggatcggaatgagctttcaattactaggattagtaaaatcgaatttggggataatgaaatcaa atttgggggttttgtaattgtagcggatgacgtcgtttgatgttaagaggacgacttaatttaagtttta acagaattattaacagagtttaattgctctgttacacgattaaacttcatgtataaaacaacttcgtcaa ttaaagttcattatttaatttgaaagtcaaactaaagttcagtatttaaaacgttttagttagagttggg gattaaattcaacgaaatgaaaaagttgaggatttataagacatttttccc1