;ID ATLINE1A DNA ; ATH ; 2254 BP ;XX ;DE ATLINE1A, non-LTR retrotransposon with not complete 5'-end - a ;DE consensus. ;XX ;AC . ;XX ;DT 19-FEB-1999 (Rel. 3.2, Created) ;DT 19-FEB-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW non-LTR retrotransposon; LINE; poy(A) tail; reverse transcriptase; ;KW Ribonuclease H; ATLINE1A. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; ;OC Dilleniidae; Capparales; Brassicaceae. ;XX ;RN [1] (bases 1973 to 2254) ;RA Parnell,L.D., Martienssen,R. and McCombie,W.R. ;RL Direct submission in GenBank (AC002983 5323-5609; September, 1997) ;XX ;RN [2] (bases 1 to 2254) ;RA Kapitonov,V. and Jurka,J. ;RL Direct submission (February, 1999) ;XX ;RN [3] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATLINE1A is a non-LTR retrotransposon. Its individual copies are ;CC ~78% identical to the consensus sequence. There is 59% similarity ;CC between ATLINE1A (position 167-869) and TA11 (position 3728-4430). ;CC Most of the individual copies are 5'-truncated. ;XX ;DR [2] (Consensus) ;XX ;SQ Sequence 2254 BP; 708 A; 336 C; 455 G; 686 T; 69 other; ATLINE1A aaatttagtttttattkaaaaktanctatatttttagaawataaatwtaatagaaattaaaaaaaaaaca aatacaamaaaggttaawtaagygaatattcggaaathwwaacaaggaaagntgattacgggcatnaaan ttkcaayagcaagtccctcagtttctcatctnttatttgtggatgatagtttcttcttttgtaaagctav aaaanaacaatgngnantaattttnggaattttaaagcawtatgaagcggtttcrggncaacarataaat tttwcaaaatcwtcgattcagtttggtcataaggtwgatgaytctmttaaggnagaaattaaatnaacct tgggwatcactaatctnggtggyatgggctantatctcgggttaccngaaagtctaggaggatctaaaac aaaaatnttttcctttgttagagatagattacagaatagaataaatggntggtcngcaaaatttttatct aaaggagggaaagaagtgatgattaaatcggtagctgcggcattaccaacttatgttatgtcttgtttta gactaccgaaaacaatcacatcvaaacttacgagtgcggtcgcaaaattttggtggagttcaaatggtga atctagaggtatgcattggatggcttggaataaattgtgtagtagtaaatcggaaggwggtttaggtttt cggaatgtagatgattttaattcggctctactagctaaacarttatggcgtttgataacggttccagatt ctctttttgcgaaggtttttaaagggagatattttcggaaatccaatcctttggataatataaaatcata ytctccatcttatggatggagaagtatttgttcagctagatctctggttaataaaggacttattaaaaga gtcggttctggggmatccatctcagtttgggaggatccgtggattccarctcaattcccgagaccagcaa taagtaatggttcaattattgatccatctttaaaagttnaaaattttataaacacccggacaaatttctg gaatattgatcttttaaangagctttttgatccggaagatgtctcgntaataagtgcnttgcacttgggt gcgtcaactaaggargatactctaggttggcatttcacaaaatctggaaaatatacagttaaatctggat atcatacrgcgaggttaaaaactttggatgataatttttctttttttggcccagacatcaaagtcttaaa agcattcwcttggaaagtacagtgtccgcccaagttacgtcacttcttgtggcaaattttagcgggttgt gtaccrgtaacggacaatttacrraaaagaggaataaaytgtgatacaggatgtnncagatgtggtgctc tagaagaaacaattaaccatacacttttcctatgccatcctgcgmgacagatatgggcactttcacagat tcctacggtcccaggaatttttccttctgcttctatttatgcgaatttggatcatttattctggagaata ccttcagaatttgattcatcttcatatccatggataatttggtatatttggaaagcaaggaatgaaaaaa tatttgaaaatgtggataaagatcctytagaggtattacgtttagcagaaaaagaggcacaatcgtggca gttagctcaacttgagcttcacagtactgaaaattatggttccttgaaatcggaaaatcgaattcgggtg mggaatatctcacatgataatatttattctggatttcgttgttttgtggatggatcatggaaagaaagcg ataagttttcaggawyaggatggtactgtacatcatcaaatggagagtcgccaaccatgggagctgcyaa tcttcgaagaagtctatctccactacatgccgaagtggaagctctactctgggcgatgaagtgtatgatt ggtgccgacaaccaagatgtagctttttttacagactgttcagacctggtgaagatggtgtcttccccaa ccgaatgaccggcgttttcagcgtatttggaggaattacagagcgacaaggaagaattcacaagtttttc tttatctttaatttctcgtagtgcaaatgttaaagcggataatttggcacgaaaagttcgtaccgaaccg cttcatatcacttatgtaaacaayattcctcaggattggctcttttgagctctaattaattatckgatga caaaaaaaaaaaaa1