;ID ATLANTYS2_LTR DNA ; ATH ; 804 BP ;XX ;DE ATLANTYS2_I is a long terminal repeat from the ATLANTYS2 endogenous ;DE retrovirus. ;XX ;AC . ;XX ;DT 26-FEB-2001 (Rel. 6.1, Created) ;DT 26-FEB-2001 (Rel. 6.1, Last updated, Version 1) ;XX ;KW Long terminal repeat; Gypsy-like endogenous retrovirus; ATLANTYS ;KW superfamily; ATLANTYS2_I; ATLANTYS2_LTR. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryotae; mitochondrial eukaryotes; Viridiplantae; ;OC Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; ;OC Magnoliopsida; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 804) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (February 2001) ;XX ;CC ATLANTYS2_LTR is a consensus sequence of a long terminal repeat ;CC from the ATLANTYS2 endogenous retrovirus. An internal portion ;CC of the retrovirus is deposited in Repbase Update as ATLANTYS2_I. ;CC There are about 10 copies of ATLANTYS2_LTR in the genome, they ;CC are ~97% identical to the consensus sequence. There is only 3% ;CC average divergence between ATLANTYS2_LTR copies which flank the ;CC same internal sequence. ;XX ;DR [1] (Consensus) ;XX ;SQ Sequence 804 BP; 263 A; 207 C; 161 G; 173 T; 0 other; ATLANTYS2_LTR tgttggggtcggattccacccaggtaagcgagccaaccatgtttcaacgcctcgggagacgtcgaagagt tatcccgaaccgggccacaaaacacctcggagatcgcatcaagaatccataccgaggcgatatcgagaac gcttcggagcattctcgtgaaatggtcccccgacccgacctcggaacgcctcggacataaaacctggcaa ttcatcccgaggcgggctccaagacgcctcgggaacgcatcctcgaatatcacggtccgagccgcccgag cacgacccgaggtcagctaaattccggctcggaagaacttcgggttagatgagaaaaccttcaaaaaagg acttagccgatataagatcaaacatatcatttccgaaaaccccggaagagataatcttcaaagatatcac cgaatacagaaattcccagaatcttcggaagataaggacaatctccttcaccaacttaaagataaagaga aatcttccgagaatatcgcgagaggcgatattccaaagctctataaaaagcacctcgaaggacaaacaaa ggggacacgcacaaaaacgctctcaacttcaggctatcaaaaacgctctgactttgaaggcaaaaacact tattttcatattctagaacacttgtacgatcaaatcattactttctcattaatacaatcaagaacaccgt ccgcggtaattgagaattctgttgttctttgagaatctcacaaagattcgttctttgaagaaacccttaa aacaatttctattgtgcgagttttgactctcaca1