;ID ATLANTYS1_LTR DNA ; ATH ; 517 BP ;XX ;DE ATLANTYS1_I is a long terminal repeat from the ATLANTYS1 endogenous ;DE retrovirus. ;XX ;AC . ;XX ;DT 27-SEP-2000 (Rel. 5.9, Created) ;DT 27-SEP-2000 (Rel. 5.9, Last updated, Version 1) ;XX ;KW Gypsy-like endogenous retrovirus; ATLANTYS superfamily; gag; RT; ;KW RNase H; integrase; ATLANTYS1_I; ATLANTYS1_LTR. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryotae; mitochondrial eukaryotes; Viridiplantae; ;OC Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; ;OC Magnoliopsida; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 517) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (September 2000) ;XX ;CC ATLANTYS1_LTR is a consensus sequence of a long terminal repeat ;CC from the ATLANTYS1 endogenous retrovirus. An internal portion ;CC of the retrovirus is deposited in Repbase Update as ATLANTYS1_I. ;CC There are about 40 copies of ATLANTYS1_LTR in the genome, they ;CC are 97% identical to the consensus sequence. There is only 3.5% ;CC average divergence between ATLANTYS1_LTR copies which flank the same ;CC internal sequence. ;XX ;DR [1] (Consensus) ;XX ;SQ Sequence 517 BP; 160 A; 135 C; 107 G; 115 T; 0 other; ATLANTYS1_LTR tgttggagctggattcccctccaggaatccacctgcgaaaataccaagccagcccacaaaagcccaccaa gcccaccaagtagaggacctacgcagctgacgagcccacatacgcgaatgggtatttgggccagataagc ccagtcacctgatgaagggagataagcgaataatgacctaggaactgatgaggagatattcgcggagcgg acctgatatctcggaactgacctgccgaatatccaggaggatctccgcagatcccggacggagctaccac gtgcgtagacctatataagggagcaaggacgacttggaagagacattcaatccagcttacattcacacac acacttttacacttgtaatctcctttcacattgtaaaagctttgtcataatcaatacaaaagtccattcg ttcttagcaatataactctcaaggtttcagtgaagatctagccctcctttctcataatcttaaatacaaa tctctagtgtggatttcagaacccaca1