;ID ATIS112A DNA ; ATH ; 5333 BP ;XX ;DE ATIS112A is an autonomous DNA transposon. ;XX ;AC AC018660 ;XX ;DT 01-FEB-2001 (Rel. 6.1, Created) ;DT 01-FEB-2001 (Rel. 6.1, Last updated, Version 1) ;XX ;KW autonomous DNA transposon; 5 bp-long target-site duplication; ;KW transposase; TIR; IS112 superfamily; ATIS112A. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; ;OC Dilleniidae; Capparales; Brassicaceae. ;XX ;RN [1] (bases 1 to 5333) ;RA Kapitonov,V. and Jurka,J. ;RL Direct submission (January 2001) ;XX ;CC ATIS112A is a autonomous DNA transposon. ;CC There are several copies of the transposon in the A.thaliana ;CC genome which are more than 90% identical to each other. ;CC They are bordered by 5 bp-long target site duplications. ;CC ATIS112A has 25 bp-long terminal inverted repeat. ;CC ATIS112A encodes two proteins, ATIS112Ap1 and ATIS112Ap2. ;CC Function of 320-aa ATIS112Ap1 is unclear. It is encoded by ;CC 3 exons (834-922, 1262-1444 and 1498-2188). ;CC ATIS112Ap1: ;CC VIWRICNKVCCFLIEYNPNAKVVGLRSNASFINLLNSQDDSHILPPNPYECFELGSANVP ;CC VYSTEWSDDDPSEDEAPIAGKKGRKGRKGRNGWLNTSKDPVVGNEQKGAAFWERIAAYYN ;CC SSPKLKGVEKRGHICCKQRWSKVNDVVNKFVGSYLAASKQQTSGQNDDDVVSLAHQIFSK ;CC DYGCKFTCEHAWRELRYDQKWIAQSTHGKAKRRKCEDDSEPVGLEDKEARPIGVKAAKAA ;CC AKAKGKGKLSPDEGEETNALKEIKSIWEIKEKDHAAKEKLIIIKEKKNRTKLLERLLGKT ;CC EPLSDIEIELKNKLINELLA ;CC ATIS112Ap2 is a 279-aa DNA transposase, which is related to the ;CC transposase encoded by the bacterial IS112 transposon. ;CC ATIS112Ap2 is encoded putatively by 3 exons (3752-3902, ;CC 4200-4319 and 4458-5026). ;CC ATIS112Ap2: ;CC MAGSSSNYNLDDMFDDKFDQCFDQALESYGNRQRVKPRKKKTYIERNREEEGTINLFGDE ;CC YLRRPTRDDLIRLLHIGEQRGFPGMIGSIDCTLNDINVFDRSPVFDDILQGRAPKVKYVV ;CC NGKDYNLAYYLTDGIYPKWATFIQSISIPQGNKASLFATTQEACRKDVERAFGVLQARFA ;CC IIKHPALFHDKVKIGNIMRACIILHNMIVEDERDGYTQFDVSEFVHPESASSSQVDFTYA ;CC TDMPSNLGNMMATRARVRDRIKHEELKADLVEHVWQHYN ;CC There are several highly divergent members of the IS112 superfamily ;CC present in the A. thaliana genome (including HARBINGER). ;XX ;DR Positions 25609 30941 Accession No AC018660 GenBank (rel. 119.0) ;XX ;SQ Sequence 5333 BP; 1638 A; 879 C; 1028 G; 1788 T; 0 other; ATIS112A agcaagtctagcaagggtttttagtgggtttctatgttgggttttttaaaaaaaatgggcccggatgaaa aaaaacagaacaatccatttaggatcgttcctaaaattgggtttttcgcgacccaatagaaactcatacg tggcttcattttattgggtaaacgttttgactaaacaaaaaaaaaaaacacgcgtttttttgttttcttc ttctctctgatttcttcgtggtcgccgacggagaccccaaatcgattctgcttctaaccaaatcgaaacc ctcatcatggttcgtatctcttcttcttcgaatcgatttgattttatgagctttgaaattgaattttgaa agagattatgatctgattgcattggtatgtatattgaattacgaattctgggaatttttagttcgtgtac taagcttgagctgcatatgttgttattagcttgttcttagttttctatatgtttgcttcattctcagtga agtcatattgttgtttctatattaacatagaaatttcagatctttatgtgtttgttctgtagctttgttt gtacctatatccttcaaagaaaaacttacggattcaggtatatgttttgttgtggtagatagaggagcat tatgtggctcaaggtttaagtattgttggatactttgatttggttgtctgaaaagtttagatgtcgtgta ttcattgcataaactggcttttgcttgttaatctttcaagccttcaaagcatctggacaacgattttgca ttatgtatttgatcttttggtagttcgttttaattaagtttttgtttctatattttttctgaggttattt ggaggatttgcaacaaagtttgctgcttcttaattgaatataatccaaatgcaaaggtggttggcttgag atcgaatgcaaggtaatttatcattttgtatttatttatgtgatcaatgctttgctgttatttactgtga taaatgcttctttgttgatataaaactgtagttagataaacgtcaattgcttttgtaggtaaacgtcaaa tgctagttcttatagcatttaaaactgtaaaactgtgatgattgcttggtaggttaattttagtcaatag tatttagtatggcattgattgtgagttgtctaacaaagccataatttgcctttaaaacacaaaaccgtaa cctttgatttttaaaacacacaaccacaaacaataatatgattcaccgaatccatatcatcatacttcaa gctttataaaccttttgaacagtcaagatgacagtcacattctcccaccaaatccatatgaatgctttga acttggatcagcaaatgtccctgtgtatagcactgagtggtctgatgatgatccaagtgaagatgaagca ccaattgctgggaaaaagggaagaaagggaagaaagggaagaaagtcaagaaaccaaagaggaattggtc atcaactgaagatgttgttctcataagtgggtggctgaacacttccaaggatccggtggtgggcaatgag caaaagggggcagctttctgggaacgtatagcagcgtactacaactcaagtcccaagctcaaaggtgtgg aaaagagaggccacatatgttgtaaacaaaggtggtcaaaagtgaatgatgttgtgaacaagtttgtagg gagctacttggctgcaagcaaacaacaaacaagtggtcaaaatgatgatgatgtggtgtctttggcacat cagatcttctcaaaagattatggctgcaagtttacttgtgagcatgcttggagggagcttagatatgatc aaaagtggattgctcagtctactcatgggaaagcaaagagaagaaaatgtgaagatgactctgaacctgt tggccttgaagacaaggaagctcgtcccattggtgttaaggcggccaaagccgcagccaaagccaaagga aaaggcaagctaagtccggatgaaggtgaagaaaccaatgctttgaaggagataaaaagtatatgggaga taaaagagaaagatcacgctgccaaagagaagctaatcattattaaagagaagaaaaataggactaagtt gcttgagcgtctgttagggaaaacagaacctctatctgacatagagattgaactgaagaacaagttaatc aatgagttgttggcttgagtttcagttgtaggttaagtgtctgtttctagattatggttctctaagtgtc tgttttaactctgtttttaagtttagtgtctgtttcaagtgtgtttttatatttagtgtctgttttttgt ctatgttttatgtttaagtgtatgactatgttaatcaatgagttgtttcagtttatgagtttgagttgtt tcactttggcactttcagtttcagtttatgagtttgagttgtttgactttcactttcacttcagttctgt tctatttttgatctagtctccaagcttacttggtattttactgatgcagaacatgtgagaaagaagaaaa tgaagagccaacaaaacaaaagttaggtcttgttccagacgaccagtttcttgctcaaaatccggttaag ttttcttctgactcttaccttttttttttttttttggttgtatcttattagcagtcatacatttgcagaa taacagaacagtaggattatggtttctattttagtcaactggttaacgagcttggttgtgctttggatct tcagtgtggagttttattattagttttctcgcacaaatttcttcatactgtatctgttctaaaaaattat ggctatgtaggaatagaatttgggctacgaagaagtaaaaccagatacattttttcgatctgcaatagat gtatgattgaaggtatcaatgattacaagctttaaacatcaatctcctatgtatttttgatagaatttgc agacaatgaaacttaaacatgcacctttattagcttcacgctcactaatctgtagaatcattttctgcct tggagctttgagtgtgtatatataacagaatcatatcgggtgaatcctgcagggacaattgagcttcact acctgttaggtcttgcaccacacatggagcatctaactgaggaaacagagccaacaaaacaaaagttagg tcttgtatcttactagcaacaaaaacgtttcagaaacgttgaaaaagttataagtccgtgctctttggaa tgtattatatcattggcaaccaatttgtttgtttgtgaacattttcaatgattttggaccgcatttaatt ggagtcacatgtggacgcagaccgcatttaaccggtttgacaaaatatgtgtttcttttaacgatgacaa accactactgaatcacagaatcataagccttgttttaatggagaagaaagaatatcaagtccaagtgttt gccattctttagtgccgacatcaagtactttagtatgtcaccaaggaatgtactttagttttgtcaccac aaacttgattgttcttttcatttgaaccattgattattgtaccattcatttgcaccattcactactcctt tatattgtatgaatgaatgtacaccgaataaaaagaattccgaacacactactcctttattgttctatat ataatccgaacactacttcaatatttctatcaactctctttatcataataataaacactcttttttatca aatcatttttatctcttctctctttctataattttgctaaaatggcaggttcttcttcaaactataatct cgacgacatgttcgatgataagtttgatcaatgctttgatcaagcattagagagttatggtaatcgccaa cgagtcaagccaaggaaaaaaaaaacatatatcgaaagaaatcgtgaagaaggtcacatccaattagtga atgattattttacagagaatccaacatatcctccccatatattctgacgccggtttagaatgaacagacc gttgttcatgcgtatcgttgagaaattctccaatgaagtcccatactttaaacaaagaagagatgccacc ggaagactcggtttctcggcactacagaagtctacagcagcaattcgtatgctcgcatatggtattgcgg ctgatgcggttgatgaatacctctgaattggtgaaagcacgtcgctgttatgtttggaacattttgcaga aggaaccataaatctgttcggggatgagtatctaagaagacccacacgagatgatcttatacgacttctc catattggagagcaacgtggatttcccgggatgataggaagcatcgactgtatgcattgggagtggaaaa attgtcccaccgcttggaaaggacaatatacacgttgatcaggaaaaccaacaatcgttttagaggccgt tgcttcacaagatctctggatatggcacgcgttttttggacccccaggtaccttaaacgatatcaatgtt tttgaccgctcaccagtttttgatgatatattacaaggtcgagctccgaaagtgaaatacgtagtcaacg ggaaagactataatttggcttactacctcacagatggaatttatcctaaatgggctacatttatccaatc aatttcaattccacaaggtaataaagcttctttatttgctacaactcaagaagcttgtcgtaaagatgtt gagcgtgctttcggagttttgcaagctcggtttgccattatcaaacatccagctctttttcatgataagg tgaaaattggcaatattatgcgagcatgtataatacttcacaatatgatagtagaggacgaacgagatgg ttacactcagtttgatgtatctgaattcgtacatccagaatcagctagctcttcacaagtggatttcact tatgctacagatatgccttcaaatctcggtaatatgatggccactagagctcgagttcgtgatcggatta aacatgaagaattgaaagctgatttagttgaacatgtatggcaacattataactagaatcaatcttaaaa tgtaatcgtttttttttccgcttttaaatatgtttttttgcttcttctttctatatcatgtatgtttaaa atttgataattcttaatcataatcatatttgctcaaataaaaatatttaacaaattttctttttttcaaa atttttttgttttagaaacccacttaaggattccaccaatggaccaaaaaatttccaaaaactcgtaaaa gtttctaaactacaaaactatccaaatttattaataaaaaatacatagaaactatactttagaaactaat cactggatttgct1