;ID ATHILA6A_LTR DNA ; ATH ; 1888 BP ;XX ;DE ATHILA6A_LTR is a long terminal repeat from the ATHILA6A endogenous ;DE retrovirus - a consensus sequence. ;XX ;AC . ;XX ;DT 17-MAY-2001 (Rel. 6.1, Created) ;DT 17-MAY-2001 (Rel. 6.1, Last updated, Version 1) ;XX ;KW Gypsy-like endogenous retrovirus; ATHILA superfamily; long terminal ;KW repeat; ATHILA6A_I; ATHILA6B_I; ATHILA6A_LTR. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryotae; mitochondrial eukaryotes; Viridiplantae; ;OC Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; ;OC Magnoliopsida; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 1888) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (May 2001) ;XX ;CC ATHILA6A_LTR is a long terminal repeat from the ATHILA6A endogenous ;CC retrovirus. There are about 50 copies of ATHILA6A_LTR in the genome; ;CC they are ~97% identical to the consensus sequence. ATHILA6A is even ;CC younger that is expected given the 3% divergence since its copies ;CC belong to different subfamilies. ;CC Solo LTRs and proviral copies are flanked by 5-bp target-site ;CC duplications. ;XX ;DR [1] (Consensus) ;XX ;SQ Sequence 1888 BP; 428 A; 449 C; 367 G; 641 T; 3 other; ATHILA6A_LTR tgatatgtctataatttgcatgttttcagtgtccattcatcatcgttttgagtccagtttcgtatcattc atcactgttttatatcatttctcatcattcttgcatactttgcatgattaggatagctttgcatacatat tgcatttctgagttgttttcaggtgatttggagctgtttgcgagcaaattggaagaaacgagccagaacc agaagacatactcgacccccaggtcgagtgactttggagccattcttcccacatactcgacccccaggtc gagtgactttggagccattcttcccatccactcgaccaccaggtcgagtaacctcagctcaggccactcg atgacattactcgaccccctggtcgagtatcacttcgccacaccacctgaccacactcgaccattcactc taccacgttactcgaccccctggtcgagtatcatcactcaccaccatcaccatcactcgaccggacactc gatcacgtcttcacagtctactcaaatccgcactcaaccagacaagctgagcacaaggaagagaagagga gaagacaaagtgtttggaagcggcctggacctccatcggatcacgaagcccatctcggcccattatcact ctatgggccgggcgattaggttattggcccgtctactatcattttatttcgttttgtataaatagatgtc ttagggttctgtcctgagacatctagtcgacattgagtttttgcttcagttttattttctgttttactct gctgcgccgcttttgcttctgcaacctgtaattcgagatttttccaagttattcagattccgcrtttgat ttcatctgtcatcttgtttctctactctttatctctttacttatgcaatattatcgtttatctgcgttta tgtctttgagcatgttgtctgagtagtgacttagaattcttagggatgggatagagtagttgtggaatcc gtagtctgtagaatggttaagttttagaattgattgaatccctttaggactagttgcgtttactgcttat ttctttctgatcaactggaattcgatcccaagcattcccgcacccagaaggtgttcgatggaatgcttga tccactagttcctgagatatgcgtctctatcccaagggattggccgtttagagcgtttattgactttatc agtctgttcttattgcctgcatagttagattccgttaatgggaattagtctgggctagctttgcttgagg atttctatcacgggagtgaattgatctgttgttgaacctgttgtctagggatagcttgattgcgcttgtt aaccattcgaataggctaggataccactctactcgattaccccatccttaggaatttctcgtctatctta tttctctgttttatcgttatcgcttaatcgttctcattgcctgtttcttagtttttacaatcactcgacc aacttactcgaccacacccagtgtctggcaacagactgtgcagtcgagtawrgttgtcttgtttcctgtc tgttactcgaccagtatactcgaccacacccagtgtctggcaacagactgtgcagtcgagtatagctgtt tcatatcctgtctgttactcgacctgttactcgaccacatcctacttctggcatcagcctgttgtggtcg agtgattttagtaattctgttattgcttctgttttctgcatgttcgcttaggactgttagaaaccccaaa actgttattgcttggcttgacttagtgacttctgatcacatctcatctgtttgcatcacacccatttgga ttgacacctaaaatactacaacgacatgattggtgttttaggaataattgactaaaaacctattatca1