;ID ATHILA2_I DNA ; ATH ; 7435 BP ;XX ;DE ATHILA2_I is an internal portion of ATHILA2 endogenous retrovirus. ;XX ;AC AF096372 ;XX ;DT 09-NOV-1999 (Rel. 4.0, Created) ;DT 09-NOV-1999 (Rel. 4.0, Last updated, Version 1) ;XX ;KW Gypsy-like endogenous retrovirus; Athila superfamily; internal ;KW portion; gag; pol; env; ATHILA2_LTR; ATHILA2_I. ;XX ;OS thale cress. ;XX ;OC Arabidopsis thaliana ;OC Eukaryotae; mitochondrial eukaryotes; Viridiplantae; ;OC Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; ;OC Magnoliopsida; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 7435) ;RA Kapitonov,V. and Jurka,J. ;RL Direct submission (November 8, 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATHILA2I is an internal portion of ATHILA2 endogenous retrovirus. ;CC It belongs to the gypsy superfamily and is related to the ATHILA ;CC retrovirus. ATHILA2 copies are ~95% identical to each other and ;CC ~75% identical to the ATHILA elements. ATHILA2_I is flanked ;CC by the ATHILA2_LTR long terminal repeats. ;XX ;DR Positions 17164 9730 Accession No AF096372 GenBank (rel. 112.0) ;XX ;SQ Sequence 7435 BP; 2204 A; 1571 C; 1659 G; 2001 T; 0 other; ATHILA2_I atttggcgccgttgccaattgggtgtttgtttgttacatttgagatttcagacttgcttagatcaagttc tttttcaattttcttttcagttactaactgtgtgtttttcttgttgtcttcttgatccaggtacacctct actgtatgccaactcgatcaacaggcaatcagaacctccttttcaacgagaacatcgaccgaatagctcg cgaactcagagaaaggagaaacacagtcaaccttgtacctcagcaaccactcgaaatggctgacgaacaa aatcaacaaaatggccctaccaacgttggtgctggagatgcaccacgtgatcaccgtcagaggaaaggaa ttgcacctcctgctatccagaacaacaactttgagattaagagtggtctcatctcgataattcaggggaa caaattccatggtctgccaatggaggatccactcgaccaccttgatgaattcgataggctctgcaaccta acaaagatcaatggtgttagtgaagacggattcaagctccgtttgtttccattctccttgggcgacaaag cacacatctgggagaagaatctgtcccatgactcaatcaccacctggatgattgcaagaaggcttttcta tcaaagttcttctccaatgccagaactgcaagactcagaaatgagatgtctggctttttacagaaggctg gtgaaagcttctgtgaagcatgggagcgtttcaagggttacaccaaccaatgccctcatcatggctttac taaagcctctctgaacaacactcttacagaggagtcctaccacacatcataatgcttctggataccgcct gcagtggaaatttccaaaacaaagatgttgaagaaggctaggaattggttgagaaccttgctcaatcaga tggcaattacaacgaggactacgataggaccgttagaggaaccgctgactctgatgacaaacacaggaag gagatcaaggcgatgaatgacaagctcgacaggattcttcttagccagcagaagcatgtgcacttccttg ttgatgacgagcaatttcaagtccaagatggggagggtaaccagttggaagaagtcagctacatcaacaa caaccagggtggctacaaaggatacaacaacttcaaaaccaataaccccaacctctcctaccgcagcacc aacgttgctaatcctcaggatcatgtgtatcctccacagcaacaacaaggtcagaacaaaccttttgttc tctacaaccaaggtttcgttcccaagcagcaattccaggggaactaccagccacaaccaccacatgggtt tgcacctcaggaaaaccaaggtcctactgctcctgatgctgaaatgaaacagatggtacaacagctgcta cagggacaagcatcaagctcaatggaaattcctaagaaattatccgaattgcaccataagctagactgca actacaatgacctgaatgccaaagtggaggcattgaataccaaagtcagatatttggaaggacaatcagc atctacctctgtacctaaagtcacaggacttccagggaagtccatacagaatccaaaggagtatgcaact gctcacgccatcaccatctgccatgatcgagagctgccaactcgacctgtccttgatttaatcattgggg agagtgatgttcaagaaggggaggcttgtactcagattgaagtctctgtgattgaattcaaccattctgc tggttctcaccatctcattcaatccacctcggaagagaaggccgccataatcgagagaatggtgaaacga ttcaaacctactccattaccctcacgtgctcttccgtggacatttaggaaagcgtggatcgagagataca agtctgttgcagcgaagcagctagacgagattgaagcagtgatgccactgatggaagttctcaacctgat tccagatcatcacaaagatgtgagaaatttgatactggaaaagatcaagatgtatcacgattcagatgat gaaagtgatgccactccatctcgagttgttgataagaggattgttcaagagaagttagaagatcctggat ctttcactctaccatgttccattggggaattagctttcagcgattttctgtgcgatctcggagcctctgt cagcttaatgccactctctatgggaagaaggttagagttcattcactataaaccttgtgacctgactttg atccttgcggataggtcttctagaaaacccttcggcatgctgaaagatctaccagtcatgattaatggag tagaagtgcctactgacttcgtggtgctgaatatggaagtaaagcataaggatcccttaatcctgggaag acccttcttagcttcagtgggagcagtgatagatatcagggaagggaaaataagccttaaccttggaaag cacatcaagttgcagtttgacatcaacaaaactccacaagggtcaacagaagatggaaaaatctctagaa atgatagagtggagaaggatatgagactgaaagagtaaagaaacttaaaaagaggtctgatacgcaagaa gaaactatagagaggctagctcactctgttgaggaacttaggagtaagctgaatcagatgcagaaggaag ctcaacctaaaggcgggattaacactatcccgagaaaaaaattcacttcaagatggtctgaagagacaga ttaccctctagaagagaaggaagcctattttgaagaaaggggaattgagtattctgctgtagacctctcc agggaggacgctgagtatgatgatgatatcagagaggattgtgcagatcctctctatcattcattttctt cttgataagtgtgaggagtcaagctagagactttaaacaagcttacttgggaggaagtcccatgattatc attgtaaataatttttactttcttgttatttttgatttgttttagttgtgtttgtggttctcaaaaaaaa aaaatgggaataacgtgaaggtagagtaaaaattcaaaacttttactctactgatggcctagagatcgag tacattggtcgagtgtgagtgatgtttaaaacctaaaaacttttaaatcatcatttcactcgaccaacag aagctacagagtcttactgggagtttataaagtttacagaagattgttggatttcctgagactttcctag tgaagaaagaataataactcataacaaggagacaaacgaggaacccactgctgcaccctatgtctcccat gctcctaaccaacagacaagaaatccaacaccttcttctcacaaccactcgactccctcaccctatccta tctcaacccatcactcgacctcgacgccatcaccatccctcacctatcacttactcgacctcgttatctc ctccacacctattaaactctaccccatccctcctcattcatcatcaccaacaaaccaactctcatactct caaccactcgacctcctcaccatcttcttcatatactcgacctcaacatctttttccacacaccaaactt cctcaagtgttcgattccatcactcgatcgccgctgctttcgtctctttgccaccaccacctctcattcg tctccgtttcacttgaccgtcacattcgcttcactcgacttcaccacaagaacacctctgcctttcaagc tcacagtcactcgaccacgagttcaccaaaccgaaaaaaagaagaagaagaagaaaaaatttggtacact cgaccggtttactctgttggattgtgtttttggttttgttggaactaacgtattaacgttaatttttgag ttacatttgttttcaggtttcatcatgagtaactacagtggagaatcctcttcggaccctgattataatg tggatgaagctgagtcctggtccgctagaccgagagagcaacatgtttaccagagcttcagggatgaatt tgaatgctctgcaactcgacgtaatcagagaagtgctgaaatcgccagaggaaagagggcgatgtcgagt agatatgagctgattgatgaggacatcggaactgagtatgagcaagagtcatggcgtaaggagacaaagc tgcggaacaaacctgacgaggttacagtggaggagtatatcagattctttaagatgaatgacttctgggg aacgaggtattcgtgctatgagactttagcccagctggggttactagaggacgtgcagcatctgttcgag aagtgtcatctggagacactcatgtcttacccttacgctgcttattaggaggagacaatcgagtttcttt ccacacttcaagtggagatgtatgagggactcacagactttgagctggataccatggggttaggcttctt gacgttcttagtggatgaacagcggtatcagcttgcgatcaagaagttggaagaactgtttggtttccct agtggaaagggaaccaaacccagatttgacagagaggagcttaaagatttgtgggccactatagggaaca atctaccgctaaacttggcgcggtctaagagcaaccaaatccaaagtcctgtgatctgctactttcagcg ctcggttgccaacgtcttttactccagggagtctacaagcaccgtgtctaacacggacatggagatgata gattccgcgcttacagggattctccgccgtacgaaaggaaagaatgtcttgagaggcgatctcaacaacg caccaccagaaatgtctgttgatccacctgtgtggatataggaagtgggcgttgatgaacggaaagaaga aggtgagaggagcactatgcgtgggtggcgttgtgatgccaattctggaagcttgtggagtaccgctcaa ggaaccaggtttagcactgaggatgatggacttggataatttgcgccgatgtgagttcttggagtttgac atggctggcgacttccaccgctacaggttcgagcattcatcgattagaatcgccaacattcttctcccct gcattgacgctactaggattctcgagggaaggaacattgacttcaagcctgcgcttgaagatctttattt tgagggcagtccgccaactgatgatgttagtcacaccgaaggagctccaacagaagatgttgatgagaca gatgatatagatgaggcggagttcaacacaagcatgtatcatttcagtgagcatatacctccagcgaggg aaagcaagagtttgagcgaagctcacaggaaaaacagcaagctgcagaagtggtgcaagaaacaggataa gctactcgtcaagtgcctcagggctatcaagtttctgaaggacaagatcagctgctcctcttccactaca gccattccgcagggacaactttctcaggacatgccttcgaggagatatgacgcgcccgagccaagtcggc gcaggcctgagcctagagagcaagagattccgcatgtccctgcgaggcattcatcattcgagcctcgtga atctgggaggagaggaggaccacactcactcgatctagcagaaggagcagacgacttctacagtctcgta gtttacgcgaccgcggtgctgaccgcagtagaagaagagaggtcgagtatcctcagagcggtgctggctg ccacagagctgatgaggtcgagtacccacctgctggagctgatacggaacaaggcggttcgtctatggcc tgggagcaatcacatgcagccattgacgaccaactccgttcattcttcgactaaggtaagcgcctcactt caccattgtattatatcatctgttgtgatttgttctttattttgtttctgtgattggatttgtcctgtgt actctcttccaagtttattcacacagtggtctgtgtgatttaagtttaggggagggctcaggaagtgtgt gttgcattgtatatattcttgagtctgcattcatctaaggcatagaaaaaccaaaaaatttaaaaaattt aagaaaatgatttcacaaaaaaagagtgttcatgtaattgcattacatttaggattgagtctagagtgtt tcatttaggattgttgcatgtgcataggggataatgatgagatagccttgtaagcattttggttcaccgg ataaactcagtgccctcgttgcttgttgtctgttgcataatcaatgaatttgaaataaaactgaaccatg cctagactgctctacacgaccacattgtcatgatctgataacattccctatccatttgaacctgaatctg atctttaattatcatgtctgcatcaaatttgaactcatggataccctaaaatacttggattttcttattc attttgatcactcttgttaatccaagtagctgactctccttattagagcagttaacccaaacccaaacct agactttctttcaagccctatatcacttgtgagtgtttgtgaggtcttattccgattaagccttgtagaa agtgttaggttcgtaacgacagagatagtgtctcatgtagttctagttcgcatttttcggactagatatg actaggtgggcgcttatactttgggttgggatgtgtttaaagaaaaaaaaaaggttgattcattgataag aaaaggtagaagactctaggtgaagtaagctaaagaagcagaaaaagtctagtaaaggttttgggatttg taaagaaaagaaagagttttgttatctattgaagatgggcaaaaccccttggttttaaaatgttaaaaac aggaatcttagttgttaaagaaatccaaatccgctagatgtatcaaagtgttgagaaagcttctcctaga gttaagagaaaagaaaagaatgattagaaaaagggcttaaaagattcatgaatgcaaagggtagagttaa gttcttatattgggattggagatgggattaccattagagcttcatttgatatactctgggtagatgggat cttatctctgtatgcatagcttgggacttacctttagcattctactaaagcttaatcattttttgagaga tcccctgttactgaagcctattctgtaagggaccatctttgtctcttgaccttttaccttagccaaatga gttcattgatgatgcattgcttgattcatgttacaaaactaatgaatgttaaagggattgatagatttga aaacatgtgtaggtcgagcatatgagtcagattgattgataatgaggtatggctaacgtttttgagtaga attcgatcatattgtagattagaactttcaacttggagattgatttcatcttgtttatctggtgctttgg ctcttagtccccgctttcaaacctcacttccagcttgttcttgattgtttgcttgagggcaagcaaagac tacgtttgaaggagt1