;ID ATGP6I DNA ; ATH ; 3973 BP ;XX ;DE Internal region of ATGP6 gypsy-like LTR retrotransposon. ;XX ;AC AC006267 ;XX ;DT 12-APR-1999 (Rel. 3.2, Created) ;DT 12-APR-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; gypsy superfamily; gag; pol; ATGP6LTR; ATGP6I. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 3973) ;RA Kapitonov,V.V. and Jurka,J. ;RL Direct submission (March 1999) ;XX ;RN [2] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATGP6I is a gypsy-like gag-pol LTR-retrotransposon that was active ;CC recently since there is only 3% divergency between its LTRs; it has ;CC 5 bp-long target-site duplication. Internal region carries ;CC long deletion and several false frame-shifts induced by mutations ;CC in the provirus. ;XX ;DR Positions 82709 78737 Accession No AC006267 GenBank (rel. 109.0) ;XX ;SQ Sequence 3973 BP; 1262 A; 757 C; 875 G; 1079 T; 0 other; ATGP6I tgtggtatcagagccactttgttatcaggttttgaagttccaaccctaaacttctgtttttcttctttca gatctccgttcaatcttgcgtgaattttataaaatatttggctcattcaaaaattgtgaaaccaattgca ttcgaaccgtttacgagtctagtattcttggagttgttttgataatttttcagatccgtttttatttgcc tgtttttggactgttttacttgttaaatttttaatttttcaggtacaatggtgacaagtgaagaagatga agcgtcatctgcctctagcttggaaaggaggattttgaaaacagtcacatcagctatggcaacattaatc gatgaaaagcttagtgctctaaacttacatcaagtcaacccggacgcaaatccatgtctaagacaagaag aaccaagggaagatgaagaggcaagaaattactatagtcacgcctcctctcacagtagccaacgtaggca tcgacgagagagaccaccacctagagatcccttgggaggcctaaaactcaaaattcctgcattccatgga accgacaatccggatacttacttggaatgggagcaaaaaattgagttagtctttctttgtcaagaatgtc ttcagtccaacaaggttaaaattgcggctactaagttttacaactatgccttaagttggtgggatcaact tgttactagccgaagacgtacccgagactatccgatcaaaacatggaaccagctgaaattcgtcatgcga aagagatttgtgccgagttactatcatcgtgaactacatcagcggttgagaaatttggttcaaggaagca aaaccgttgaagaatactttctggaaatggaaacccttatgttaagagctgatcttcaagaagatggaga agcggtcatgtcccgattcatgggaggtcttaaccgagaaatccaagaccgtctagaaactcaacactat gtggagcttgaggagatgcttcacaaagcggtcatgttcgaacagcaaatcaagagaaagaacgcccgat caagtcacaccaagaccaactacagctcgggaaagccaagttatcaaaaggaagagaagtttggttatca aaacgattccaagccgttcgtcaagccaaaaccggtcgatttagatccaaaaggaaagggtaaggaagta atcacgagggctagagatatacgatgctttaagtctcaaggacttcggcattatgcgagcaagtgttcca acaaaaggatcatggtccatagagacaatggcgaagtagaatccaaagatgagagtgcggaagaagactc aatggaagaagatgtggaatcccccgctagaggagagtttgcgagaagatcgttgagtgttctaacaaag gccgaggaacaagcgtaaagggaaaacttgtttcatacacgttgcttggtcaaagataaggtatgtagtt taattattgatggtggaagttgtactaacattgcgagtaggaacatggtcgagaaacttggtttagaagt gcttaaacacccgagaccgtattcgctccaatggcgtaatgaaacgggtgagatgtccgtcaaagaacaa gtcaaggtaccactatcaattgggaagtatcatgatgagatcatgtgcgatattctacatatggacgcta gtcacatccttctcggacgaccatggcaatcggatcggaaagttcttcaagatggcttcaccaaccgaca aaccttcgaacacaatggccgaaagacaactctcatcccgatgactctgcacgaagtgtatctagaccag ctaagtatgaaacaacgggccatcaaaccaaccgaaccaatcgatacaaagggcaagaacaaggtaagta aaaatagtttactctttgttttcaaagaaacacttatttgttcaattaatcccgtaccggtgctaccgag taagatcgagttgattttgcaagagtataaggacgtgtttctagaagacaatcccataggtttaccaccc atcagtgggatcgagcatcaaatcgacttcgtttcggtagccgctctaccaaactgaccagcttatcgca tcaacccgaccgaaacaaaggaactcgagagacaagtgaatgagcttatggacaaaggtcatattcgtga aagcatgagtctgtgtgccgttctggtcttactagtaccaaagaaagatgggattgtcgagccatcaaca atatcacggttaagtatcgccaccctatccctcgattagatgatacgcttgataaattgcatggttctag catcttttcaaaaattgatcttaaaagtggttatcatcaaacccggatgaaggaaggtgatgaatggaaa acggctatcaaaactaaacaaagattatatgaatggttagttatgccgtttgggttaacaaatgcaccta acactttcatgagattgatgaatcatgtccttaggaagcatattggagtatttgttattgtttattttga tgacatcttggtttatagcaaaaacttggaatatcatgtcatgcatcttaaactcgttttggacttgctt cgaaaagaaaaactttatgcgaacttgaagaagtgcaccttttgcacggataatcttgtttttctaggct ttgttgtaagtgcagatggaatcaaggttgatgaagaaaaggtcaaggcgattcgagaatggccgaaccc taagaatgtgagcgaggtgaggagctttcacggtctagcgggattttactgacgatttgtcaaagatttc agcaccattgtcgccccgcttatggaagttatcaagaaggacattggattcaaatgggaagatgcacaag aaaacgccttccaagccttgaaagagaagcttactaattcttccgttccaattcttcctaattttatgaa aagttttgagattgagtgtgacgcctccgggttaggtattggagctgttttgatgcaggatcacaagccc attgcttactttagtgagaagttaggaggagcgactctcaattatccgacctacgacaaggagctttacg cattggtccgcgcactacaaacgtggcaacactatctatggccgaaaaagtttgtcattcataccgacca cgagtctctcaagcacttaaagggtcaacaaaagctcaacaaacgtcatgctcggtgggtcgaattcata gaaacctttccatacgtgattaagtacaaaaaaaggtaaagataatgttgtagccaatgcattatctcgg aggtatgttttgcttacttctttggatgcaagattgttgggttttgggcaaataaaagacttgtatgcta atgattctgattttagcaaaatatttcaatcttgtgagaagtttacctttggaaaatattatcgacatga tgggtatttattctttgaaaatagactttgtgtgcctcactcttctttgcgagaattgtttctaagggaa gctcatggaggtggcttaatgagacattccgcgactaagttttctccttttgaaatcgtttatgggttca aacccacatctcctttggatctaattcctttacctttgagtgaaagatcaagtcttgatggtaagaagaa agacgatttagtacaacaggtactaaatcttgaggctcgaacgaagcaatacaagaagtatgcaaacaaa ggtcgaaaagaagtcatcttcaacgaaggcgatcaagtgtgggttcatcttaggaaaaaacgttttccgg aagtgcgatcatccaagctaatgccaagaatcgatggaccattcaaagtgctcaaacggatcaacaacaa cgcctacaaactcgatctccaaggtaagtataatgtgaatggtagtttcaacgtttctgatcttcaacca ttttttgcagatacttcagatttgagaacaaatccttttcaagtgggagagga1