;ID ATGP1LTR DNA ; ATH ; 1160 BP ;XX ;DE ATGP1LTR; long terminal repeat from the ATGP1 ;DE LTR-retrotransposon - a consensus. ;XX ;AC . ;XX ;DT 21-JAN-1999 (Rel. 3.1, Created) ;DT 27-DEC-2001 (Rel. 6.3, Last updated, Version 1) ;XX ;KW LTR retrotransposon; Gypsy superfamily; ATGP1 damily; ;KW ATGAGPOL1_I; ATGP1I; ATGAGPOL1_LTR; ATGP1LTR. ;XX ;OS consensus ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; ;OC Dilleniidae; Capparales; Brassicaceae. ;XX ;RN [1] ;RA de la Bastide,M.R., Parnell,L.D., Kaplan,N., Gnoj,L., Hameed,A., ;RA Schutz,K., Hasegawa,A., Gottesman,T., Shohdy,N., Granat,S., ;RA Jensen,K., Johnson,A.F., Lodhi,M., Dedhia,N., Martienssen,R. ;RA and McCombie,W.R. ;RT A. thaliana BAC T32N15 from chromosome V ;RL Direct submission to GenBank (September, 1997; AC002534) ;XX ;RN [2] (bases 1 to 1160) ;RA Kapitonov,V. and Jurka,J. ;RL Direct submission (January, 1999) ;XX ;RN [3] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC ATGP1LTR is a long terminal repeat from the ATGP1 ;CC LTR-retrotransposon. An internal part flanked by ATGP1LTR is ;CC deposited as ATGP1I. ;CC The consensus sequence has been reconstructed based on 30 individual ;CC copies present in the GenBank 109.0 release. There are two major ;CC subfamilies of ATGP1LTR. Sequences from the first subfamily ;CC are ~97% identical to each other; the second subfamily is a little ;CC bit older since its copies have 95% mutual identity. There is ~92% ;CC identity between sequences from different subfamilies. Examples of ;CC the first subfamily include copies found in AB01821 and AC002534 ;CC GenBank loci; copies found in AF0588825 and AC006268 represent the ;CC second subfamily. There is 97% identity between consensus sequences ;CC reconstructed for each of these subfamilies. ;XX ;DR [2] (Consensus) ;XX ;SQ Sequence 1160 BP; 281 A; 141 C; 299 G; 439 T; 0 other; ATGP1LTR tgtaacgcccgtgaaccggaaaatcggttagggtttgtttttaaatcatccggtttaattggttgggtta attggaaaccctagagtgtgcctataaaagaaggaaactcgaaattagggctttagttagccacttttcg ttttataaaggagaaaaagagagaaaaggagaaggagcagaatcgttagggtttgggagaaatcagtttc gtcatatcaaatcgtggtaaaaggtaacgaaatttggtagagttattcccaagtcctttatcgttattct ccagtttacagaattggatttggattaaaattggttgagttattcgcagtttcgtgagacacgttttctc agacgcgaattaggaccagcggagattgaaactgagatcgtggtctcgtctgttttccgatcggcacgag attttgtgggcagctttgtgacgtctgcagctaggatttcaccggagcgattgaatagttaacggttagc ttgtattttagggtttcgtctttgagactgcttgtttctggtttttcctgtccagtttgcttcaaggttg cttttggttgtggacttgttgtaggacgtttctggactgtttcagacgcaaggagagtctctcctgggtt taattgctattagaatcaatttgttaaggtgagtgcgtgaccatgagcttatctgagcgattgggttgtg tgatttgttttgtgtgatgatatgtaggtgtggtgaatgtgttttgggtgaattgttcaatgactggttt gtttgtattgtattcgtgattatacctttttatttgcttgtgtgtatagctcgtagatgggaggatcgcc tcactaagtatttatgataatacttacgcatctcattgtgttgttgatgcaggtaaagataaagtgtgat cgtggaatcatggcaaggaagagaggatgatctaggaactcgtttgttttatttttggtgtttttggtta ttggaacccggttaggattgtcagttattcttggttttgttggtcgaattatttatttattcataaaata gtatttttgacttgcggtttaattattatgttattggttggtttaattagatatttatgggaatatttaa ttatatttttttttaaaaaaaaatgggtcgggttgtttca1