;ID ATGP10_I DNA ; ATH ; 6217 BP ;XX ;DE Internal portion of the ATGP10 gypsy-like retrovirus - a fossil. ;XX ;AC AC022456 ;XX ;DT 30-NOV-2001 (Rel. 6.3, Created) ;DT 30-NOV-2001 (Rel. 6.3, Last updated, Version 1) ;XX ;KW LTR retrotransposon; retrovirus; gypsy superfamily; ATGP10 family; ;KW gag; reverse transcriptase; ATGP10LTR; ATGP10_I. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 6217) ;RA Kapitonov,V.V. and Jurka,J. ;RT ATGP10_I, an internal portion of the ATGP10 gypsy-like retrovirus. ;RL Repbase Reports 1:(3) p. 30 (2001) ;XX ;CC ATGP10_I is an internal portion of ATGP10, a gypsy-like ;CC retrovirus which was integrated into the genome long time ago; its LTRs ;CC (deposited in Repbase as ATGP10LTR) are 90% identical to each other. ;CC Two ORFs, which have encoded GAG and POL polyproteins, are saturated ;CC by false stop codons and frame shifts. ;XX ;DR Positions 59417 65633 Accession No AC022456 GenBank (rel. 124.0) ;XX ;SQ Sequence 6217 BP; 1867 A; 1097 C; 1595 G; 1658 T; 0 other; ATGP10_I atttgtggtataagagcatggttaatcatgctacaggactcgtatttttcaaaatgttttatcgagtaaa tgagtcgcaaaaggcatttaggataatctggtctgttcaccattattaggtagatgggttaagtttacct tggttgaatggatgcagatgtctggtcaaagaacggagaggagtgtgtcgataaatttctcaccagttta cgaaaactggagtcagcatttcggtccggaagactgggtaccgtatgttggaggagaaggagatgaggga tactattatcccaatatgtatggagcgcctgattgggatgttcccggaaccacaccggaatactccttac caaggtctgtgcactatagcacatctgaatgggtcacactcggggatgagaccacatgttcctgtgaatc aacataccgcacacccaaatccgtcgcagccaaaagaagttaatgaaggaaatgcggaaggccgtaatgt tcaaaatgtgccagagactcaagagatgttggggatgattcagaccttgttgactcacatgattcaacaa cagcaacaccaacaacagatgcaggaaagccagcgtgcagaatctcctggagaaggtcttaaaactggtt atgatgatgaaggatcttggtgttcggaagttcaaaggagagcaaaatactgttttagcggataagtgtt tgaggaacctggaaatgaattttgaaacttgaaggtgcccggaagactttaagggccagatagcggtaaa ctttttagatgcggatgttcgagcatggtgggatagtgttgtttcacgataccgcgaccagcctatcaca tgggaaatgtttaagaaggagtttgagtctaagtattttccacctgggcacgtgatcgtctggagctaca gtttatgagtttggaacaagggcaaaagagtgtcagggcatacgagcaaattttttcaagacttcgaaga tatttgtacaatggaagggatgatgaagctatgatggtacgaaggtttttaagaggactaaggcctgaaa ttaggggacgtcttcaggctgtgacttataccaatgtgagtgaattgactgatagggccgtgaatgttga agaagggattgagttagaaaagggaaacaagtttcaggagaatgaaaagtctgaaggcaaaaaggggaat aatgtagaatttcagcctggtgttttgaggactaattagtcgggaggacgaaacccgaataatgatcgtg ggaagcctaaggttggtaaccaaggaggacgtgtaatgaccacttacgatccaagagcctgctatatgtg cggaaagccgggacattttgcacgagattgctcaacggtcgtacagacgaaagtgccaattctggcattt gttacttgttacatttgtggggagtcagaacatgtgtcaaatgcatgcccgaataagcaagcgggactac aggataaccgagtgcgagcttgtttcatttgtagagacctagggcattatgctaacgcatgcccgaacag gcaaataaagcagtataaccaaatggttaaccacccaccgccagttcagaaagctaagggaccaccggta aagaagcaagccactctagcaaatgtttatgccttagatgtagaacctaccaaaccttcaggacccgcaa aagttcctgtaacaggttagtatgggttcttacttttcttatttatgcgtgtttgagtgattgatcgttg tgtgcgtagtttactagattaaatattgcatacatcattttcatttgcattagggacattacttgttagt ggtaaccccacacatgtattgttcaatttgggagcgacaaatagttttgttagttctgacgtggccgata agtttggccatgggtatgagaaaagagaagtgaatgttttggtacatactgcgggaaatcagccaccctt gcagacccgagttgtgttagtaggagttccagtagttatccaggatacgattctacaggcaaaccttttg ggaatgccgatggaaaggtttgaagttatctttgggatggattggttgtcaggatatcatgcccatttag attgtaggcggagcagagtagtgttcgaactaaggaatcgaccacgactcacttactgtggaatcaatcc aagtaagattgcttcgttcgtgtcagcactaaaggttgagaatttactatgggaaggagaagtctacctt gtcactttaaccgccattggtggagaagttgaaggtgactcaaggattgaagagatcccagttgtgaacg aatttgaagatgtgttcaagcccttggaaggattacctccaccgagaaatcatttgtttaccattaatct tgaaccgggggtgactccaattacaagggcaccatataggatgccaccagttgagcttgcagaacttaaa aaagaattggaggatctactcgaaaagagatttattcgtccaagttcatcgccatggggagcttcgatat tgtttgttaagaagaaagatggaagtatgcggttatgtatagactaccgaggtcttaacaacatgaccat aaggataagtacccattgccacgagttgatgaactattggatcagttgagaggagcaagttagttctcaa aaattgatctagcctctaggtatcatcaaatttcaatcttggagctggatgtaatgaagactgcctttca gacgaggtatgggcaatatgaatttgtagtcatgccatttgaacttacaaatgcacctccagccttcatg agacttatgaacgaggtactccatgattatttggatagcttcgttatcatatttattgatgatatcttgg tatattcacggagtgcggaagagcatcgtgaacatcagtggaaagtgttggatagacttagggaacaacg gttgttcgctaagtttagcaagtgtaagttctggcaacgagaaattggatttcttggtcacagaatttta ggacagggagttacagcggatcctgaaaagattgccgtaatacagcaatggtcgcgacctacatccgtta cagaagtacggagtttcttaggattggcaggctattaccgtaagtttgtcaagggattttcgtcaattgt taagcctttgacccgacttactggtaaaggtgtacccttcatatggagtaaggaagttgaggaagccttc gtaaagttgaaaaagacattaacgaccgctctaattttagcattgctagagccgaataaaccatatgata cggatgcctcaagagttggcttgggatgtgtcctgatgcaagaagaaaatatgaatgcctatgcgtcacg ataattaagacggcatgaggagaattatcccactcacgatttagagattgccgctgtagtatttgcgttg aaggcctggagatcatacttgttcacgctgccagacctgaatctacgacaacggagatggatggaattaa tcgccgactatgatttggagattcagtatcatccgggaaaggctaatgtggtggcagacgccttaagttg ccagaaaatgaaagtaaatgttggaaaggatctagagtcgttaactgatgagttaaagaaagtaaatctg ttagctttagagggtgaatctagtgagcccttgggtttacaagccgtgactcaagcaaacctacttcacc gaatccgagaagaacaagtacaagatgaaaagttatagaaaattgcggaggagttaaaaacattagatag accaaacgctagtggctaccatctagctgatgacggcaccttattactcaatgggaaaattacagtgcct gatcgtaaaggattacgacaagaaattttaagggcggcgcatacttctttattgagcattcatctgggaa gtacaaaaatgtacaaggatataaggaagtattaccattggcctgggatgaagagatcagtggcaaaatg cgtaagccaatgtgattcatgccaaggagttaaggtggaacaccaagtgccggcaggtttattgtgtaac ctaccaatccctggatggaaatgggagtcaatctcgatggattttatcactggattaccaacaagaccag gacgtagcaatgatgctatatgggcagtagtagatcgctagaccaagatggctatttggtatcaatgaaa agcgcaaataagtcacctatcctggcagaaaagtatattgatgaaatcttaagactccatggagtacctg ctaatatagtatccgatcgagatcctaagttctcatctatattttggcaagacctccagcatgctttagg gactgatgttcacatgagcaaggcattccatccgaaaattgatgggcaaactgaaaagaccatcaccgaa ccatagaagatatgattcgactatgtgcactagagtgggctggtgattgggaagactacatacctttagt tgaattttcttacaataacaactatcactcgagcatcggtatgtcgccatttgaagcaatgtatgggagg ccatgtcgaactcctctttgttggactgaagtaggagagaggatgagttttaataatcggttgatcaatg agactgcggagaaaattcagttcatccgagacaatatgaagaaagctcaagatcgacagaaaaactatgc tgaccgaaagaggcgtgaagtggaattccaagaaggcgacatggtttatcttaaggtaactgcgttaaaa gggaaagatcgttttggaaaagttggaaagctcgcagtaagatttattggtccatacaaaattgagaaga gaatcggggaggtaccctaccgtttgtttatgccagaagaaatgcgagtacataaagtttttcatgtgtc gcaactaaggaagcacgttccggatcctaatgctatcatacccgagccgatacaagagttgaaaacgaat ctcacctttcccgaaatccctcttggtactggtgaaagaagaatgcggagataaagaatagaaggattct acaaattcaagtgttctggggaaggcaaaatcgtaaggttattacttgggcaaatgaggaaaagttcctc ggacaaaatatccacagtttttcgaaccacggaatgctgaggatgaagtcggaccgtctaatccttctgg aatttgggacaaattctattaaggggggggggagaatgtagtgacccgcgtagagacatcggccacaagc aagagtccaaattttagaaagttgcccgaatgcatggccaattgaccttaagtgcccaaaacacaataca ctatcaaagggaaaatatgggcaagtttgggcaaaaatgggcacgaatgggcaagtttgggcaagatcgg gcgtgctgcgggcaaagtttgccccaccaggcgttgaccgaccgttgaccgcgccaaggacgtgtggctc ggctgacatggggcccaagcaaagttgcttggagccgaattttagttgcgttgagccgaagtttgggtgg ccacgtgtagctcatccgctagagcgacgagtgtgtcatcacgagcggatgacacgtggatcgctgactc gcccaagcacttgacatgtggacctgcagactcgcccttttcccttgcctatataagccgaacacgaccc cgattgttttgtgaagagaaagtgagtggaagtgagaggctgccgagttgaaaccgtccgtccgattcaa gttaaggtcccatagctgaaaactttgcccgaatcgttgaaaactttttgttggttactgagtgagttct ggataatggtttaagtttcatattcatattctcatgtattcttgattgattttgtgagttatatggatcg tgtgaatggttatattggaatgcatatgtgatctttagattcttatgctattatttatggttgggaggtt gtgttgggatattgatgattctatgtgtttgatttaaccatatatttcataatatcttaaactttggggt cttggtacatggtgattgtggtaggaggcaaagaccataagcgtgccaagatcatgatatgtctgacctt catagtgaaccgtgttatcgtggggtcttgtaacgatttacttgatcgccatgtagtgcgaagaactcag agagacggggttagctaccctggccgagtgtctacacgacggtgtagagtttggtag1