;ID ATCOPIA9I DNA ; ATH ; 4300 BP ;XX ;DE Internal region of ATCOPIA9 LTR-retrotransposon. ;XX ;AC AC005396 ;XX ;DT 12-APR-1999 (Rel. 3.2, Created) ;DT 12-APR-1999 (Rel. 3.2, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW ATCOPIA9LTR; ATCOPIA9I. ;XX ;OS thale cress ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Charophyta/Embryophyta group; ;OC Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; ;OC Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; ;OC Arabidopsis. ;XX ;RN [1] (bases 1 to 85214) ;RA Rounsley,S.D., Lin,X., Kaul,S., Shea,T.P., Fujii,C.Y., Mason,T.M., ;RA Shen,M., Ronning,C.M., Fraser,C.M., Somerville,C.R. and Venter,J.C. ;RT Arabidopsis thaliana chromosome II BAC T26I20 genomic sequence ;RL Unpublished ;XX ;RN [2] (bases 1 to 85214) ;RA Rounsley,S.D. and Lin,X. ;RT Direct Submission ;RL Submitted (07-AUG-1998) The Institute for Genomic Research, 9712 ;RL Medical Center Dr, Rockville, MD 20850, USA, rounsley@tigr.org ;XX ;RN [3] (bases 1 to 85214) ;RA Rounsley,S.D. ;RT Direct Submission ;RL Submitted (25-SEP-1998) The Institute for Genomic Research, 9712 ;RL Medical Center Dr., Rockville, MD 20850, USA ;XX ;RN [4] ;RA Kapitonov,V.V. and Jurka,J. ;RT Molecular paleontology of transposable elements from ;RT Arabidopsis thaliana. ;RL Genetica 107 (1-3), 27-37 (1999) ;XX ;CC The authors [1-3] have wrongly presumed an intron in the ATCOPIA9 ;CC ORF; the ORF has been corrupted by several mutations; there is ;CC 1% divergency between ATCOPIA9 LTRs; ATCOPIA9 has 5 bp-long ;CC target-site duplication (Kapitonov,V.V. and Jurka,J.) rather than ;CC 6 bp-long target originally reported [1-3]. ;XX ;DR Positions 47404 43105 Accession No AC005396 GenBank (rel. 109.0) ;XX ;SQ Sequence 4300 BP; 1183 A; 1028 C; 832 G; 1257 T; 0 other; ATCOPIA9I tggtatcagagccatggatcaatccatggatctctatactcttccatctttgaacatctcaaactgtgtt acggtgaaactcacagaccgtaactacattttgtggaaatctcaatttgaatcatttctctctgggcaag gccttcttggtttcgttaatggcgcctatgctgctccaacaggcacagtttctggtccacaagacgccgg cgtcactgaagctatcccaaatccggattatcaagcttggtttcgctccgatcaagttgttatgtctgag gatattctcagtgttgttgttggttccaaaacatctcatgaggtatggatgaatctcgcaaaacacttca atcgcatttcttcctctcggatctttgagcttcaacgccgccttcatagtttatcaaaagaagggaagac catggaggagtatctgcggtatctcaagactatatgtgaccaactcgcctctgtgggaagtccagttgct gaaaagatgaagatttttgccatggttcatggtcttactcgagagtatgaaccgttaatcacttctcttg agggaaccttagatgcgtttcctggtccatcttatgaagatgttgtttatcgtctcaagaactttgacga tcgtctccaaggctacactgtcactgacgtttctccccatctggctttcaacactttccgatcttcaaac agaggccgtggaggaagaaacaacagaggcaaaggaaacttctcaactcgaggtcgtggatttcaacaac agttctcctcctcaagttcttctgtctctgcgagtgagaaaccaatgtgtcagatttgtggaaaaagagg tcactatgctcttcagtgctggcatcgatttgatgactcttaccaacactctgaagctgcagctgctgcc ttctcagctcttcacataaccgacgttagtgacgacagtggttgggttcctgattctgctgcaacagctc acattaccaacaacagctctcgtctgcaacaaatgcaaccttatcttggcaatgacacagtaatggctag tgatggtaattttctgcctatcactcacattggctcagctaatctcccttctacatcaggtaatctccca ttaaaagatgtattggtatgccctaatattgctaagtccctattatcagtgtcaaaactgactaaagact atccctgctcctttacctttgatgctgatggtgttcttgttaaggacaaggcaacttgcaaagttctgac aaagggaagcagcacaagtgagggactttataagttggagaacccaaaatttcagatgttctattccacc cgacaagttaaggcaactgatgaagtttggcatatgcgattaggtcatccgaatcctcaagttcttcaac tcttagctaacaagaaggcgatccaaataaataaaagtaccagcaagatgtgtgaatcatgtaggcttgg gaagagttcgagattgccatttattgcttcagattttattgcttcaagacctctagagagagttcattgt gatctctggggtccagctcctgtttcatctattcaaggttttcagtactatgtaatcttcattgataatc gatccagattctgttggttctatccattaaagcacaaatcagatttttgttcactcttcatgaagtttca gagttttgttgaaaatctcttgcaaacaaaaattggaacttttcagagtgatggaggaggagaattcaca agtaataggttcttacaacatcttcaagaatctggtatacaacattatatctcttgccctcacacaccac aacagaatggtttggcagaaagaaagcatcgacaacttacagaaaggggtcttacattaatgtttcaaag caaagcaccacagagattttgggttgaagcattctttactgccaacttcctcagcaatcttcttccaaca tcagctcttgacagctctactacaccttatcaggttctatttggaaaagcacctgactactctgccttga gaacattcggatgtgcctgcttccccacactccgtgcatatgctcgtaataagttcgatccgaggtctct caagtgcatttttcttggttatacagaaaaatacaagggttatcgctgcttctttcctcccactaaccga gtatatctcagtcgccatgtcttatttgatgagagctcctttcctttcattgatacttacaccagtttgc agcatccttctccaactcctatgtttgatgcttggttaaaaagttttccaagctcttcatctccgctgga aaatgaccaaactgcaggcttcaactcgggtgcaagtgttcctgtgatcacagcacaacaaacacaaccg attctgtcattaaaagatggccctaacattctccttccagagggggagataacagttagtagcaacaatc aagacatagaagatgaaccaatctgtgtcacaccgctccaaacgctttcttcagaagataatgctaaaag ttctgagacactgtctatgggaagtgaggagtgttctgagtgtacggcaagcttcgatcttgatcctatt gggaacaacgctctctcttcatcccctaggcatgatcaattaacttccagcattcctcgtgcggctacag aatctactcaccctatgactacaaggctaaagaaaggaattatcaaactaaatcaacggtatgctcttct cacacacaaagtctcatatcctatgccaaagacagtaactgcagcattaaaagatccaaaatggactgct gctatgatagaggaaatgggaaactgctcttagacacatacttggacgcttgttcctctacaaccaaata tgcatgtactaggctctaaatgggttttcagggtcaaacttaatgttgatggctcattagacaagtacaa agctcgactagttgctcaaggcttcaaacaagaagaaggcattgactatcttgagacatacagtcctgtt gtgcgatctgcaaccgttagagctgtgcttcacctttctaccatcatgaactgggaactcaaacaaatgg atgtcaaaaacggttttctccatggagatcttactgaaacggtttacatgaaacaaccagctggattcat tgacaaagctcatcctgatcatgtgtgcttattacataaagctctttatgggctcaaacaagctccaagg gcctggtttgacaagttcagcaaatttttgctcagctttggttttgtttgcagtatgtctgacccttctc tctttgtttgtgtaaagaacaaagatgtgatcatgcttctcctctatgttgatgatatggttatcacagg aaacagctcaaagcttctctcaagtcttctcagtgagctaaataagcagttcaaaatgaaggatttgggc agactaagctattttctcggtatccaggctcagtttcattctcaaggtctttttctctctcaacaaaaat atgcagaagatcttctagccacagccgcaatgtccaactgttctcctgttgcaacaccgttaccacttca acctgagagaacccctaatcaaaccgagctcttcgacaatccatcttacttcagaagcctggctggtaag ctgtagtacctcacacttactagaccggacctccaattctcggttaattacgtgtgccaaaagatgcacg cccctacagtatctgattttcatcacctcaaacggattctccggtacatcagaggaacaacaaccatggg aatttcattcaacaaggacacggattgtcaactacgagcttacagtgacagtgatcacgccggttgtcac ggtacacgtcgctccaccggtggcttctgtacattccttggcaacaatctaatctcctggtcttcacgga aacaggactccgtcgcaaaaagctcaactgaagctgaataccgctctatgtctgttacagcctcggagat cacatggctagttaatttacttcgcgatcttggcgttcctcaattacagcttcccgaactcttctacgac aatctctctgccgtttaccttacagcgaatccatcttttcatgctcggacaaagcactttgcaactcact atcattatgtccgtgagcaggtagcttttggtgagctcatcgtccatcatataccgggttatctacagct cgctgacatatttacgaagtctctcgccaaggctcctttcgaatctctccgattcaaacttggtgtcgat ttcccaccttctccaagtttgaggggggag1