;ID ATCOPIA93_I DNA ; ATH ; 4550 BP ;XX ;DE Internal region of the ATCOPIA93 copia-like LTR-retrotransposon. ;XX ;AC AC006423 ;XX ;DT 27-DEC-2001 (Rel. 6.3, Created) ;DT 27-DEC-2001 (Rel. 6.3, Last updated, Version 1) ;XX ;KW LTR-retrotransposon; COPIA superfamily; internal region; ;KW copia-like polyprotein; reverse transcriptase; the ATCOPIA93 ;KW family; ATCOPIA93LTR; ATCOPIA93_I. ;XX ;OS Arabidopsis thaliana ;XX ;OC Arabidopsis thaliana ;OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; ;OC euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; ;OC Rosidae; Capparales; Brassicaceae; Arabidopsis. ;XX ;RN [1] (bases 1 to 4550) ;RA Kapitonov,V.V. and Jurka,J. ;RT Internal portion of the ATCOPIA93 copia-like LTR-retrotransposon. ;RL Repbase Reports 1:(4) p. 2 (2001) ;XX ;CC ATCOPIA93_I is an internal region of the ATCOPIA93 copia-like ;CC endogenous retrovirus flanked by the 96% identical ATCOPIA93LTR ;CC long terminal repeats and a 5-bp target-site duplication (CAGCC). ;CC ATCOPIA93 forms a separate family of copia-like retroviruses ;CC present in the A. thaliana genome since members of other families ;CC are less than 75% identical to ATCOPIA93_I. ;CC Chromosome 4 (AL161500, 110753-116088) harbors the ATCOPIA93A ;CC provirus whose identical LTRs and internal portion are 88% and ;CC 91% identical to these in ATCOPIA93. ATCOPIA93A is a subfamily ;CC of ATCOPIA93. ;CC ATCOPIA93_I encodes remnants of the ATCOPIA93p copia-like ;CC polyprotein. The ORF which encodes ATCOPIA93p is damaged by 5 ;CC false stop codons and by 5 frame shifts induced by indels. ;XX ;DR Positions 33043 28494 Accession No AC006423 GenBank (rel. 124.0) ;XX ;SQ Sequence 4550 BP; 1448 A; 886 C; 955 G; 1261 T; 0 other; ATCOPIA93_I tggtatcagagcatgttcttcgattcttaacatgctaaatctcttctacttactctattctacttatctt ctatctacttcttaaatctacacatttctcttcaagaaacactctattacccaacggttaaaagagtgca ctcatcatggagactccaaaaccggcgatcttgaagggagaaaactatctcctatggaagagaactacaa aaacagtgttatgttgtcgagggatttggagccatgttgagaccaaacatgttcagtttaagctaccaaa taagacggcagtgaagggttcaacagggaagaagaagaagcggagatcgagaaataagccaagtggtttc aagaagatcataacgttctaactatccttcaacactcgcttgagagctccattcttgaggcttactcata ctgtgaaactgcacgtgaactgtgggagacgctcgagaatgtgtatggaaatgtgtcaaacttgactcgg gtctttgaagtcaagaagaccattaacaatctcactcaagaagacttggagttcaccaaacactttggga agtttcggtcactatgggccgaacttgagatgcttcgaccaattactgtggattcggccattcttaacga gagaaaggaacaagacaaagtatttggccttctccttagtctcaatcatgccttcaatgacctcatcaaa caccttctttgagtcgacaaacttccctcacttgaaaatgtttgttcccaagtgcaaaaggaacaaggat ctctcagactatttaggggtaagggcgaacttctcacggctcacgaagggatctacaaaagtgaggaaag gaaggcatgggtgtgtgatcattgcaagaagaagggtcatatgaaggacaaatgttggattcttcatcct catctcaagccggctaagttaaaggcaaacatatctcaagaagttgcaagtgatcaaggagaagtggtga ggaagtcaaatttggaggctctcataagatccattgcctcgttaaaggaatctggtacctctttctttac ttatgaaccaagtaaaacgcttaaggaatctgatacatctttctttacttctgaaccgagtaaaatgctt gtcatagattcgggtgcctctcaccacatgataaacaaccctagtctaattgacagcataaaactggctt taggtaatgtagttatagcaaatgcagataaagtaccggtaaaaggaataggagacttaaacttatttga taagaaatctaaagctctctttatgcctagctttactttaactcttttatcggttaaaagagctactaac gatttaaattgctatacaatatttggtcctagtagtgtacattttcaggatattaagaccagaagggtac ttggaaagggagatgctaaaggagatctttatgtgtttgagaaaaccccattgagtgattgtacttcagt ttcacttaattcttgtttagctagtaatctgaatgttgcgtggcatgctagattaggccaccctcatgct cgtgcttttatattaatgttgcggaatgtttcctttgataactctacttgtgagtcttgtattcttggaa aacattacaaatctatttttccaaagtcattgactatttatgaaaattgttttgacttagttcactcgga tgtttggacgtttccttgcatatctatggataataagaagtaatttgtgacctttattgatgagaaatct aaatatacatggatcacattgttacaatctaaaaatttgtgtgatagatgagtttataaatttctaaaac tatgtcactaattactttaatgctaaaattaaggtactaagatccggcaatggtggagagtatacaagtc acaaattcaaagagtacctcgcaaaacatggcattattcatcaaacgagctgtccttacataccccaaca aaatggagtggcggagagaaagaatcgacacctcatggaggtagcaagatcgatgatgtttcatacaaac gtcaccaagaagttttagggagatgctgtaatgacagcatgctatcttatcaatagaactcccaccaaag tcctacaagacgtttctccatttgaggtactcaacaaaaccaaactctctcttgatcacttacgggtttt cggttgtgtatgttttgtattagtatccggtgaccaaagaaacaagttagacgcaaaaagtactcgatgc atgttcattggatactcaacaactcaaaagagatacaagtgttatgatcccattaatcaacgtctgtatg tgtctcgggatgtgaagttctttgaagaaagaggatattacgagaagaaagattggaatagcttggccga tctttctacaccctcaacagatcgtgctacaagtttacagtttcttcttgatcatcttggagttactcca tcaagtgaaagagaaatcaagacaagagacttggtagaagaaccggttgttctcgatcaagaccatgaac aagaggaaaccccaaacctacaacaagatggagacgttagtggaatcccaacatatgatgatgtggatat tctcactcaacatgaagatgtaagtgctcaagagttaaccgaccaacataccactaccattcagtcggaa cttcctcgacaagctacctcaactttaagacgaagtactcggattaagaggaaatcttcccgcttgtatt acaacaataaggcggtagctcaccctatacaagcagtgtgttctcttgccctcttgccacaagatcacca agcttttctgggaaaaatagaagaaaacttcgttccgcaaacctatgaggaagccaaagagagtgaagag tggatgattgcggtggcggatgaaaccggagccatgatccgtaaccacacttgggatgaagaggagttac ctcagaggaagagtgcggtaagctcaaaatgggtcttcaggataaagtacttgagtaattgtgagataga aaggcataaagcccgcttgtagcacgcgggtttactcaaacttatggtcgtgactatactgaaacatttg accccgtcgccaagctacacacggttagagttgttctatcttttgctactaacctctcgtgggacttatg gcaagtgaatgtcaagaacgcttttcttcaaggagagctagaagaagaagtgtatatgactccaccaccg ggactagaggattccattgctctggggaaagttttgcgacttcggaaggcaatttatggcttaaaacaat ctcctagagtttggtatcataagttgagtactactctaaaggaaaaagggttcaagaagtccgaagctga tcacactctcttcgcacttcaatccgatcaaggtatcattgttgttctcatttatgtcgatgatattatc atctctggagacaacaaagaaggtatccatgacaccaaactctaacttaaatctacattggatataaaat accttggcgaactaaagtattttttagggattgaagtatgccgctctctcgagggcttatttctttcaca aagaaaatacactcttgatcttttgaatgagacaggaaaacttggatcaaaaccggctaagacacctctt gttgatggctatacggtcaagcgaacagggggaagaagaagaataatgcaacaatagatccgttaaatga accatatgaagatttttctcaatatcggagactagttggtaagctcatttatttgaccattacacggcct gacctttgttttgcagtacatcaagtgagtcaacacatgcatgcccccaccaaatatcattggaacatgt tggagaggattctacgatacatcaaagggagtccgggccaaggaatttggatggggaagagcgatagtac cgaaatagtcgggtattgtgatgcggattatggtagagataccaccgataggaaatcaacaacgggctat tgcacatttattggaggaaacttagtcacttggaagacaaaaaagcaaaagatagtttcatgctcgagcg cggaatcggagtaccgagctatgaggaagctaactaatgaactcacttggctcacgacacttctcaagga ctttggtattgaatcatcaagcccgataactatgcactgtgataaccaagccgcaatacacatcgctacc aactcggtctttcatgagagaaccaaacatatcgaggtggactgccacaaggtgcatgagaagatagacg aaggaatgatactatcgtgctatacggacaccaaagataacttgacggatatttttacaaaaggggcaag tcgcaaggtttgtgaacacatttacaacaaacttgggcgtgtcgatctcacacgtccttgatcatcttcc ctaatccatggtcattacactctttttcccttaacatagttttctcccatgcggttttctatgttaaagt tttttaatgaggtaatgtatcatgggttccaagcttaaccaattcatcataggctaagcttgagggggag 1